myRT

myRT report for GCA_900487255.1_18787_6_87

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Seq: UDYB01000199.1 Shigella sonnei strain 4028STDY6275192 genome assembly, contig: ERS1017866SCcontig000199, whole genome shotgun sequence (5851 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66-431 0 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-461 0 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDYB01000192.1 Shigella sonnei strain 4028STDY6275192 genome assembly, contig: ERS1017866SCcontig000192, whole genome shotgun sequence (6452 bp)
Overview 1 RT 1: 241-4552 bp Neighborhood of RT #1 [241, 4554] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 241-462 bp Feature: domain Description: Tra5 Location: 253-445 bp Feature: domain Description: Tra5 Location: 2 53-445 bp Feature: gene Location: 475-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1432 bp Feature: gene Location: 1901-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2 051 bp Feature: domain Description: GIIM Note: maturase Location: 2135-2351 bp Feature: domain Description: GIIM Note: maturase Location: 2 135-2 351 bp Feature: gene Location: 2781-3023 bp Feature: gene Location: 2935-4554 bp Feature: domain Description: ushA Location: 2950-4552 bp Feature: domain Description: ushA Location: 2 950-4552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), ushA (PRK09558)