myRT

myRT report for GCA_900487285.1_18787_5_33

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Seq: UDYM01000037.1 Shigella flexneri strain 4028STDY6275042 genome assembly, contig: ERS1017660SCcontig000037, whole genome shotgun sequence (38426 bp)
Overview 1 RT 1: 33356-36776 bp Neighborhood of RT #1 [33356, 36841] MFS_MdfA_MDR_like PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 33356-33613 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 33377-33587 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 33377-33587 bp Feature: gene Location: 33684-34130 bp Feature: domain Description: PHA02517 Location: 33687-34128 bp Feature: domain Description: PHA0251 7 Location: 33687-341 28 bp Feature: gene Location: 34247-35770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34520-35252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34520-35252 bp Feature: domain Description: GIIM Note: maturase Location: 35327-35525 bp Feature: domain Description: GIIM Note: maturase Location: 35327-35525 bp Feature: gene Location: 35724-36149 bp Feature: gene Location: 36362-36841 bp Feature: domain Description: PHA02517 Location: 36422-36776 bp Feature: domain Description: PHA0251 7 Location: 36422-36776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MdfA_MDR_like (cd17320), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDYM01000081.1 Shigella flexneri strain 4028STDY6275042 genome assembly, contig: ERS1017660SCcontig000081, whole genome shotgun sequence (16970 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDYM01000169.1 Shigella flexneri strain 4028STDY6275042 genome assembly, contig: ERS1017660SCcontig000169, whole genome shotgun sequence (5816 bp)
Overview 1 RT 1: 2578-5279 bp Neighborhood of RT #1 [2578, 5299] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2578-2733 bp Feature: gene Location: 2759-3130 bp Feature: domain Description: GIIM Note: maturase Location: 2837-3056 bp Feature: domain Description: GIIM Note: maturase Location: 283 7-3 056 bp Feature: gene Location: 3138-3941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-3933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 43 8-3 93 3 bp Feature: gene Location: 3954-4154 bp Feature: domain Description: Tra5 Location: 3963-4137 bp Feature: domain Description: Tra5 Location: 3 963 -413 7 bp Feature: gene Location: 4550-5299 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4625-5279 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4625-5279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)