myRT

myRT report for GCA_900487315.1_18787_5_27

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Seq: UDYC01000117.1 Shigella flexneri strain 4028STDY6275036 genome assembly, contig: ERS1017648SCcontig000117, whole genome shotgun sequence (10131 bp)
Overview 1 RT 1: 330-8265 bp Neighborhood of RT #1 [330, 8330] PAP2_acid_phosphatase Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 330-1079 bp Feature: domain Description: PAP2_acid_phosphatase Location: 405-1059 bp Feature: domain Description: PAP2_acid_phosphatase Location: 405-1 059 bp Feature: gene Location: 1476-1676 bp Feature: domain Description: Tra5 Location: 1485-1659 bp Feature: domain Description: Tra5 Location: 1 485-1 659 bp Feature: gene Location: 1689-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1989-2484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 989-2484 bp Feature: gene Location: 2545-2871 bp Feature: domain Description: GIIM Note: maturase Location: 2578-2797 bp Feature: domain Description: GIIM Note: maturase Location: 2578-2797 bp Feature: gene Location: 3224-3466 bp Feature: gene Location: 3378-5030 bp Feature: domain Description: ushA Location: 3390-5028 bp Feature: domain Description: ushA Location: 3390-5028 bp Feature: gene Location: 5371-5817 bp Feature: domain Description: PHA02517 Location: 5374-5815 bp Feature: domain Description: PHA0251 7 Location: 5374-581 5 bp Feature: gene Location: 5934-7457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6207-6939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6207-6939 bp Feature: domain Description: GIIM Note: maturase Location: 7014-7212 bp Feature: domain Description: GIIM Note: maturase Location: 701 4-721 2 bp Feature: gene Location: 7411-7836 bp Feature: gene Location: 8049-8330 bp Feature: domain Description: PHA02517 Location: 8055-8265 bp Feature: domain Description: PHA0251 7 Location: 8055-8265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UDYC01000126.1 Shigella flexneri strain 4028STDY6275036 genome assembly, contig: ERS1017648SCcontig000126, whole genome shotgun sequence (9525 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)