myRT

myRT report for GCA_900487325.1_18787_6_91

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Seq: UDXV01000202.1 Shigella sonnei strain 4028STDY6275196 genome assembly, contig: ERS1017874SCcontig000202, whole genome shotgun sequence (5251 bp)
Overview 1 RT 1: 2273-5038 bp Neighborhood of RT #1 [2273, 5055] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2273-2515 bp Feature: gene Location: 2687-2842 bp Feature: gene Location: 2868-3395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2874-3018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2874-301 8 bp Feature: domain Description: GIIM Note: maturase Location: 3102-3318 bp Feature: domain Description: GIIM Note: maturase Location: 31 02-331 8 bp Feature: gene Location: 3405-3677 bp Feature: gene Location: 3694-4821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994-4651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994-4651 bp Feature: gene Location: 4834-5055 bp Feature: domain Description: Tra5 Location: 4846-5038 bp Feature: domain Description: Tra5 Location: 4846-5038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: UDXV01000193.1 Shigella sonnei strain 4028STDY6275196 genome assembly, contig: ERS1017874SCcontig000193, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192 3-2 034 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )