myRT

myRT report for GCA_900487335.1_18787_5_18

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Seq: UDYE01000170.1 Shigella flexneri strain 4028STDY6275027 genome assembly, contig: ERS1017630SCcontig000170, whole genome shotgun sequence (5695 bp)
Overview 1 RT 1: 380-3515 bp Neighborhood of RT #1 [380, 3515] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 380-1129 bp Feature: domain Description: PAP2_acid_phosphatase Location: 455-1109 bp Feature: domain Description: PAP2_acid_phosphatase Location: 455-1 1 09 bp Feature: gene Location: 1525-1725 bp Feature: domain Description: Tra5 Location: 1534-1708 bp Feature: domain Description: Tra5 Location: 1 534-1 708 bp Feature: gene Location: 1738-2541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038-2533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038-2533 bp Feature: gene Location: 2594-2920 bp Feature: domain Description: GIIM Note: maturase Location: 2627-2846 bp Feature: domain Description: GIIM Note: maturase Location: 2627-2846 bp Feature: gene Location: 3273-3515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDYE01000116.1 Shigella flexneri strain 4028STDY6275027 genome assembly, contig: ERS1017630SCcontig000116, whole genome shotgun sequence (11122 bp)
Overview 1 RT 1: 3260-10676 bp Neighborhood of RT #1 [3260, 10678] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3260-3388 bp Feature: gene Location: 3478-3717 bp Feature: domain Description: PHA02517 Location: 3481-3652 bp Feature: domain Description: PHA02 517 Location: 3481-3652 bp Feature: gene Location: 4309-5832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-5314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582 -5314 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: gene Location: 6009-6395 bp Feature: domain Description: PHA02517 Location: 6012-6393 bp Feature: domain Description: PHA02 517 Location: 6012 -6393 bp Feature: gene Location: 6560-10678 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: Peptidase_S6 Location: 6713-8885 bp Feature: domain Description: Peptidase_S6 Location: 6713-8885 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDYE01000012.1 Shigella flexneri strain 4028STDY6275027 genome assembly, contig: ERS1017630SCcontig000012, whole genome shotgun sequence (66271 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)