myRT

myRT report for GCA_900487345.1_18787_5_37

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Seq: UDYA01000151.1 Shigella flexneri strain 4028STDY6275046 genome assembly, contig: ERS1017668SCcontig000151, whole genome shotgun sequence (6877 bp)
Overview 1 RT 1: 4227-6848 bp Neighborhood of RT #1 [4227, 6874] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4227-4712 bp Feature: domain Description: COG3547 Location: 4245-4698 bp Feature: domain Description: COG3547 Location: 4245-4698 bp Feature: gene Location: 4808-4975 bp Feature: gene Location: 5001-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 87-5841 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: domain Description: GIIM Note: maturase Location: 591 9-61 41 bp Feature: gene Location: 6229-6612 bp Feature: gene Location: 6695-6874 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6698-6848 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6698-6848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDYA01000123.1 Shigella flexneri strain 4028STDY6275046 genome assembly, contig: ERS1017668SCcontig000123, whole genome shotgun sequence (9906 bp)
Overview 1 RT 1: 2-7445 bp Neighborhood of RT #1 [2, 7510] Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 2-202 bp Feature: domain Description: Tra5 Location: 11-185 bp Feature: domain Description: Tra5 Location: 11-185 bp Feature: gene Location: 215-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515-1010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515-1010 bp Feature: gene Location: 1071-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1104-1323 bp Feature: domain Description: GIIM Note: maturase Location: 1104-132 3 bp Feature: gene Location: 1750-1992 bp Feature: gene Location: 1904-3556 bp Feature: domain Description: ushA Location: 1916-3554 bp Feature: domain Description: ushA Location: 1916-3554 bp Feature: gene Location: 3897-4343 bp Feature: domain Description: PHA02517 Location: 3900-4341 bp Feature: domain Description: PHA02 517 Location: 3900-4341 bp Feature: gene Location: 4460-5983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4733-5465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4733-5465 bp Feature: domain Description: GIIM Note: maturase Location: 5540-5738 bp Feature: domain Description: GIIM Note: maturase Location: 5540-5738 bp Feature: gene Location: 5937-6362 bp Feature: gene Location: 6575-7510 bp Feature: domain Description: PHA02517 Location: 6599-7316 bp Feature: domain Description: PHA02 517 Location: 6599-7316 bp Feature: domain Description: PHA02517 Location: 7322-7445 bp Feature: domain Description: PHA02 517 Location: 732 2 -7445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)