myRT

myRT report for GCA_900487415.1_18787_7_91

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Seq: UDYI01000200.1 Shigella sonnei strain 4028STDY6275292 genome assembly, contig: ERS1017915SCcontig000200, whole genome shotgun sequence (5728 bp)
Overview 1 RT 1: 241-4552 bp Neighborhood of RT #1 [241, 4554] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 241-462 bp Feature: domain Description: Tra5 Location: 253-445 bp Feature: domain Description: Tra5 Location: 253-445 bp Feature: gene Location: 475-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1 432 bp Feature: gene Location: 1901-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 907-2051 bp Feature: domain Description: GIIM Note: maturase Location: 2135-2351 bp Feature: domain Description: GIIM Note: maturase Location: 21 35-2351 bp Feature: gene Location: 2781-3023 bp Feature: gene Location: 2935-4554 bp Feature: domain Description: ushA Location: 2950-4552 bp Feature: domain Description: ushA Location: 2950-4552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: UDYI01000204.1 Shigella sonnei strain 4028STDY6275292 genome assembly, contig: ERS1017915SCcontig000204, whole genome shotgun sequence (5533 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192 3-2 034 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UDYI01000265.1 Shigella sonnei strain 4028STDY6275292 genome assembly, contig: ERS1017915SCcontig000265, whole genome shotgun sequence (3413 bp)
Overview 1 RT 1: 526-3049 bp Neighborhood of RT #1 [526, 3198] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 526-747 bp Feature: gene Location: 1023-1805 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-1737 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-173 7 bp Feature: gene Location: 1831-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 9-2029 bp Feature: gene Location: 2095-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: gene Location: 2545-3198 bp Feature: domain Description: HTH_23 Location: 2638-2725 bp Feature: domain Description: HTH_23 Location: 263 8-2725 bp Feature: domain Description: InsE Location: 2854-3049 bp Feature: domain Description: InsE Location: 2854-3 049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)