myRT

myRT report for GCA_900487495.1_18787_5_36

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Seq: UDYP01000022.1 Shigella flexneri strain 4028STDY6275045 genome assembly, contig: ERS1017666SCcontig000022, whole genome shotgun sequence (54761 bp)
Overview 1 RT 1: 1637-9053 bp Neighborhood of RT #1 [1637, 9055] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1637-1765 bp Feature: gene Location: 1855-2094 bp Feature: domain Description: PHA02517 Location: 1858-2029 bp Feature: domain Description: PHA0251 7 Location: 1 858-2029 bp Feature: gene Location: 2686-4209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2959-3691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2959-3691 bp Feature: domain Description: GIIM Note: maturase Location: 3766-3964 bp Feature: domain Description: GIIM Note: maturase Location: 3766-3964 bp Feature: gene Location: 4386-4772 bp Feature: domain Description: PHA02517 Location: 4389-4770 bp Feature: domain Description: PHA0251 7 Location: 4389-4770 bp Feature: gene Location: 4937-9055 bp Feature: domain Description: ESPR Location: 4940-5009 bp Feature: domain Description: ESPR Location: 4940-5009 bp Feature: domain Description: Peptidase_S6 Location: 5090-7262 bp Feature: domain Description: Peptidase_S6 Location: 5090-7262 bp Feature: domain Description: autotrans_barl Location: 7826-9053 bp Feature: domain Description: autotrans_barl Location: 7826-9053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDYP01000030.1 Shigella flexneri strain 4028STDY6275045 genome assembly, contig: ERS1017666SCcontig000030, whole genome shotgun sequence (46258 bp)
Overview 1 RT 1: 176-3838 bp Neighborhood of RT #1 [176, 3858] DDE_Tnp_IS66 RVT-GII GIIM COG3547 sopB_N HTH_24 ParB Feature: gene Location: 176-307 bp Feature: domain Description: DDE_Tnp_IS66 Location: 188-281 bp Feature: domain Description: DDE_Tnp_IS66 Location: 188-2 81 bp Feature: gene Location: 784-2001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-1624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-162 4 bp Feature: domain Description: GIIM Note: maturase Location: 1702-1924 bp Feature: domain Description: GIIM Note: maturase Location: 1702 -192 4 bp Feature: gene Location: 2290-2775 bp Feature: domain Description: COG3547 Location: 2308-2761 bp Feature: domain Description: COG3547 Location: 2 308-2 761 bp Feature: gene Location: 3031-3858 bp Feature: domain Description: sopB_N Location: 3055-3250 bp Feature: domain Description: sopB_N Location: 3055-32 50 bp Feature: domain Description: HTH_24 Location: 3352-3427 bp Feature: domain Description: HTH_2 4 Location: 3352 -342 7 bp Feature: domain Description: ParB Location: 3463-3838 bp Feature: domain Description: ParB Location: 3463-3838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), sopB_N (cd16394), HTH_24 (pfam13412), ParB (smart00470), RVT-GII, GIIM (pfam08388)

Seq: UDYP01000171.1 Shigella flexneri strain 4028STDY6275045 genome assembly, contig: ERS1017666SCcontig000171, whole genome shotgun sequence (5729 bp)
Overview 1 RT 1: 413-3548 bp Neighborhood of RT #1 [413, 3548] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: gene Location: 1771-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: gene Location: 2627-2953 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: gene Location: 3306-3548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)