myRT

myRT report for GCA_900487535.1_18787_7_48

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Seq: UIQD01000232.1 Shigella sonnei strain 4028STDY6275249 genome assembly, contig: ERS1017863SCcontig000232, whole genome shotgun sequence (4177 bp)
Overview 1 RT 1: 546-3848 bp Neighborhood of RT #1 [546, 4018] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 Feature: gene Location: 546-767 bp Feature: gene Location: 1043-1825 bp Feature: domain Description: DDE_Tnp_1 Location: 1049-1757 bp Feature: domain Description: DDE_Tnp_1 Location: 1 049-1 757 bp Feature: gene Location: 1851-2054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 959-2049 bp Feature: gene Location: 2115-2471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2124-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 24-2445 bp Feature: gene Location: 2565-3233 bp Feature: domain Description: HTH_23 Location: 2673-2760 bp Feature: domain Description: HTH_23 Location: 2673-2760 bp Feature: domain Description: InsE Location: 2889-3084 bp Feature: domain Description: InsE Location: 2889-3084 bp Feature: gene Location: 3377-4018 bp Feature: domain Description: HTH_23 Location: 3455-3596 bp Feature: domain Description: HTH_23 Location: 3455-3596 bp Feature: domain Description: HTH_33 Location: 3701-3848 bp Feature: domain Description: HTH_33 Location: 3701 -3848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592)

Seq: UIQD01000199.1 Shigella sonnei strain 4028STDY6275249 genome assembly, contig: ERS1017863SCcontig000199, whole genome shotgun sequence (5421 bp)
Overview 1 RT 1: 2-4583 bp Neighborhood of RT #1 [2, 4585] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 2-151 bp Feature: domain Description: PRK09409 Location: 5-149 bp Feature: domain Description: PRK09409 Location: 5-149 bp Feature: gene Location: 272-493 bp Feature: domain Description: Tra5 Location: 284-476 bp Feature: domain Description: Tra5 Location: 2 84-476 bp Feature: gene Location: 506-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-1463 bp Feature: gene Location: 1932-2459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938-2082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938-2 082 bp Feature: domain Description: GIIM Note: maturase Location: 2166-2382 bp Feature: domain Description: GIIM Note: maturase Location: 2 166-2 382 bp Feature: gene Location: 2812-3054 bp Feature: gene Location: 2966-4585 bp Feature: domain Description: ushA Location: 2981-4583 bp Feature: domain Description: ushA Location: 2 981-4583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: UIQD01000192.1 Shigella sonnei strain 4028STDY6275249 genome assembly, contig: ERS1017863SCcontig000192, whole genome shotgun sequence (5937 bp)
Overview 1 RT 1: 547-2517 bp Neighborhood of RT #1 [547, 2552] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 547-1236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748-1210 bp Feature: gene Location: 1251-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257-1401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257-1401 bp Feature: domain Description: GIIM Note: maturase Location: 1479-1701 bp Feature: domain Description: GIIM Note: maturase Location: 1479-1701 bp Feature: gene Location: 1894-2040 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1906-2017 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1906-2017 bp Feature: gene Location: 2067-2552 bp Feature: domain Description: COG3547 Location: 2085-2517 bp Feature: domain Description: COG3 547 Location: 2085-2517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )