myRT

myRT report for GCA_900487565.1_18787_7_74

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Seq: UDZC01000202.1 Shigella sonnei strain 4028STDY6275275 genome assembly, contig: ERS1017898SCcontig000202, whole genome shotgun sequence (5209 bp)
Overview 1 RT 1: 242-4553 bp Neighborhood of RT #1 [242, 4555] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 242-463 bp Feature: domain Description: Tra5 Location: 254-446 bp Feature: domain Description: Tra5 Location: 254-446 bp Feature: gene Location: 476-1603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1 433 bp Feature: gene Location: 1902-2429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1908-2052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 908-2052 bp Feature: domain Description: GIIM Note: maturase Location: 2136-2352 bp Feature: domain Description: GIIM Note: maturase Location: 21 36-2352 bp Feature: gene Location: 2782-3024 bp Feature: gene Location: 2936-4555 bp Feature: domain Description: ushA Location: 2951-4553 bp Feature: domain Description: ushA Location: 2951 -4553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), ushA (PRK09558)

Seq: UDZC01000194.1 Shigella sonnei strain 4028STDY6275275 genome assembly, contig: ERS1017898SCcontig000194, whole genome shotgun sequence (5530 bp)
Overview 1 RT 1: 2945-4924 bp Neighborhood of RT #1 [2945, 4950] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2945-3430 bp Feature: domain Description: COG3547 Location: 2963-3395 bp Feature: domain Description: COG3547 Location: 2 963-3395 bp Feature: gene Location: 3526-3693 bp Feature: gene Location: 3719-4246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3725-3869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372 5-3869 bp Feature: domain Description: GIIM Note: maturase Location: 3947-4169 bp Feature: domain Description: GIIM Note: maturase Location: 3947-4169 bp Feature: gene Location: 4261-4950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4462-4924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4462 -492 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)