myRT

myRT report for GCA_900487805.1_18787_7_44

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Seq: UDZS01000196.1 Shigella sonnei strain 4028STDY6275245 genome assembly, contig: ERS1017855SCcontig000196, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66-431 0 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-461 0 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDZS01000157.1 Shigella sonnei strain 4028STDY6275245 genome assembly, contig: ERS1017855SCcontig000157, whole genome shotgun sequence (8848 bp)
Overview 1 RT 1: 4441-7738 bp Neighborhood of RT #1 [4441, 7806] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4441-5472 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_2 3 Location: 4519-4660 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: gene Location: 5616-6284 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: HTH_2 3 Location: 572 4-5811 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: gene Location: 6378-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: gene Location: 6648-7076 bp Feature: gene Location: 7090-7806 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: UDZS01000030.1 Shigella sonnei strain 4028STDY6275245 genome assembly, contig: ERS1017855SCcontig000030, whole genome shotgun sequence (38321 bp)
Overview 1 RT 1: 35299-38064 bp Neighborhood of RT #1 [35299, 38081] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 35299-35541 bp Feature: gene Location: 35713-35868 bp Feature: gene Location: 35894-36421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35900-36044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5900-3 6044 bp Feature: domain Description: GIIM Note: maturase Location: 36128-36344 bp Feature: domain Description: GIIM Note: maturase Location: 3 6128-3 63 44 bp Feature: gene Location: 36431-36703 bp Feature: gene Location: 36720-37847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37020-37677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7020-3 7677 bp Feature: gene Location: 37860-38081 bp Feature: domain Description: Tra5 Location: 37872-38064 bp Feature: domain Description: Tra5 Location: 3 7872-3 8064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)