myRT

myRT report for GCA_900487965.1_18787_6_33

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Seq: UEAP01000231.1 Shigella sonnei strain 4028STDY6275138 genome assembly, contig: ERS1017763SCcontig000231, whole genome shotgun sequence (3388 bp)
Overview 1 RT 1: 546-3069 bp Neighborhood of RT #1 [546, 3218] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 546-767 bp Feature: gene Location: 1043-1825 bp Feature: domain Description: DDE_Tnp_1 Location: 1049-1757 bp Feature: domain Description: DDE_Tnp_1 Location: 1 049-1 757 bp Feature: gene Location: 1851-2054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 959-2049 bp Feature: gene Location: 2115-2471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2124-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 24-2445 bp Feature: gene Location: 2565-3218 bp Feature: domain Description: HTH_23 Location: 2658-2745 bp Feature: domain Description: HTH_23 Location: 2658-2745 bp Feature: domain Description: InsE Location: 2874-3069 bp Feature: domain Description: InsE Location: 2874-3069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: UEAP01000182.1 Shigella sonnei strain 4028STDY6275138 genome assembly, contig: ERS1017763SCcontig000182, whole genome shotgun sequence (6610 bp)
Overview 1 RT 1: 346-5781 bp Neighborhood of RT #1 [346, 5783] PAP2_acid_phosphatase Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 42 1-1075 bp Feature: gene Location: 1470-1691 bp Feature: domain Description: Tra5 Location: 1482-1674 bp Feature: domain Description: Tra5 Location: 1482 -1674 bp Feature: gene Location: 1704-2831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004-2 661 bp Feature: gene Location: 3130-3657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3136-3280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3136-32 80 bp Feature: domain Description: GIIM Note: maturase Location: 3364-3580 bp Feature: domain Description: GIIM Note: maturase Location: 3364-3580 bp Feature: gene Location: 4010-4252 bp Feature: gene Location: 4164-5783 bp Feature: domain Description: ushA Location: 4179-5781 bp Feature: domain Description: ushA Location: 4179-5781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: UEAP01000350.1 Shigella sonnei strain 4028STDY6275138 genome assembly, contig: ERS1017763SCcontig000350, whole genome shotgun sequence (529 bp)
Overview 1 RT 1: 3-393 bp Neighborhood of RT #1 [3, 527] RVT-GII Feature: gene Location: 3-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-3 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UEAP01000133.1 Shigella sonnei strain 4028STDY6275138 genome assembly, contig: ERS1017763SCcontig000133, whole genome shotgun sequence (10868 bp)
Overview 1 RT 1: 3-6465 bp Neighborhood of RT #1 [3, 6587] RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 3-137 bp Feature: gene Location: 230-2131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 97-1328 bp Feature: domain Description: Intron_maturas2 Location: 1442-1700 bp Feature: domain Description: Intron_maturas2 Location: 14 4 2-1700 bp Feature: domain Description: HNHc Note: nucleases Location: 1874-2036 bp Feature: domain Description: HNHc Note: nucleases Location: 1874 -2036 bp Feature: gene Location: 2848-3084 bp Feature: gene Location: 3153-3413 bp Feature: gene Location: 3987-5654 bp Feature: domain Description: RVT_N Location: 4035-4269 bp Feature: domain Description: RVT_N Location: 4 035-4 269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4323-4965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 323-4 965 bp Feature: domain Description: GIIM Note: maturase Location: 5016-5250 bp Feature: domain Description: GIIM Note: maturase Location: 5016-5250 bp Feature: domain Description: HNHc Note: nucleases Location: 5460-5619 bp Feature: domain Description: HNHc Note: nucleases Location: 54 60-5619 bp Feature: gene Location: 5769-6113 bp Feature: gene Location: 6165-6587 bp Feature: domain Description: DUF1380 Location: 6168-6465 bp Feature: domain Description: DUF1380 Location: 6168-64 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), DUF1380 (pfam07128)

Seq: UEAP01000151.1 Shigella sonnei strain 4028STDY6275138 genome assembly, contig: ERS1017763SCcontig000151, whole genome shotgun sequence (8934 bp)
Overview 1 RT 1: 6847-8759 bp Neighborhood of RT #1 [6847, 8794] DUF1380 RVT-GII GIIM HNHc Feature: gene Location: 6847-7266 bp Feature: domain Description: DUF1380 Location: 6850-7144 bp Feature: domain Description: DUF1380 Location: 685 0-7144 bp Feature: gene Location: 7321-7623 bp Feature: gene Location: 7736-8794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7739-8105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7739-8105 bp Feature: domain Description: GIIM Note: maturase Location: 8156-8390 bp Feature: domain Description: GIIM Note: maturase Location: 815 6-8390 bp Feature: domain Description: HNHc Note: nucleases Location: 8600-8759 bp Feature: domain Description: HNHc Note: nucleases Location: 8600-875 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: UEAP01000160.1 Shigella sonnei strain 4028STDY6275138 genome assembly, contig: ERS1017763SCcontig000160, whole genome shotgun sequence (8238 bp)
Overview 1 RT 1: 6608-8117 bp Neighborhood of RT #1 [6608, 8125] RVT_N RVT-GII Feature: gene Location: 6608-6802 bp Feature: gene Location: 7184-7318 bp Feature: gene Location: 7517-8125 bp Feature: domain Description: RVT_N Location: 7565-7802 bp Feature: domain Description: RVT_N Location: 756 5-7802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7853-8117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7853-8117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: UEAP01000188.1 Shigella sonnei strain 4028STDY6275138 genome assembly, contig: ERS1017763SCcontig000188, whole genome shotgun sequence (5984 bp)
Overview 1 RT 1: 3378-5357 bp Neighborhood of RT #1 [3378, 5383] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3378-3863 bp Feature: domain Description: COG3547 Location: 3396-3828 bp Feature: domain Description: COG3547 Location: 3396-3828 bp Feature: gene Location: 3959-4126 bp Feature: gene Location: 4152-4679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4158-4302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4158-4302 bp Feature: domain Description: GIIM Note: maturase Location: 4380-4602 bp Feature: domain Description: GIIM Note: maturase Location: 4380-4602 bp Feature: gene Location: 4694-5383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4895-5357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4895-5357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)