myRT

myRT report for GCA_900488095.1_18787_6_45

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Seq: UECG01000255.1 Shigella sonnei strain 4028STDY6275150 genome assembly, contig: ERS1017781SCcontig000255, whole genome shotgun sequence (3424 bp)
Overview 1 RT 1: 526-3049 bp Neighborhood of RT #1 [526, 3198] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 526-747 bp Feature: gene Location: 1023-1805 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-1737 bp Feature: domain Description: DDE_Tnp_1 Location: 1 029-1 737 bp Feature: gene Location: 1831-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939-2029 bp Feature: gene Location: 2095-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 04-2425 bp Feature: gene Location: 2545-3198 bp Feature: domain Description: HTH_23 Location: 2638-2725 bp Feature: domain Description: HTH_23 Location: 2638-2725 bp Feature: domain Description: InsE Location: 2854-3049 bp Feature: domain Description: InsE Location: 2854-3049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: UECG01000200.1 Shigella sonnei strain 4028STDY6275150 genome assembly, contig: ERS1017781SCcontig000200, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UECG01000192.1 Shigella sonnei strain 4028STDY6275150 genome assembly, contig: ERS1017781SCcontig000192, whole genome shotgun sequence (6575 bp)
Overview 1 RT 1: 241-4552 bp Neighborhood of RT #1 [241, 4554] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 241-462 bp Feature: domain Description: Tra5 Location: 253-445 bp Feature: domain Description: Tra5 Location: 253 -445 bp Feature: gene Location: 475-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-143 2 bp Feature: gene Location: 1901-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2051 bp Feature: domain Description: GIIM Note: maturase Location: 2135-2351 bp Feature: domain Description: GIIM Note: maturase Location: 213 5-23 51 bp Feature: gene Location: 2781-3023 bp Feature: gene Location: 2935-4554 bp Feature: domain Description: ushA Location: 2950-4552 bp Feature: domain Description: ushA Location: 2950-4552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)