myRT

myRT report for GCA_900488515.1_18787_7_13

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Seq: UEBY01000255.1 Shigella sonnei strain 4028STDY6275214 genome assembly, contig: ERS1017794SCcontig000255, whole genome shotgun sequence (3420 bp)
Overview 1 RT 1: 526-3419 bp Neighborhood of RT #1 [526, 3419] DDE_Tnp_1 RVT-GII RVT-GII InsE Feature: gene Location: 526-747 bp Feature: gene Location: 1023-1805 bp Feature: domain Description: DDE_Tnp_1 Location: 1029-1737 bp Feature: domain Description: DDE_Tnp_1 Location: 1 029-1 737 bp Feature: gene Location: 1831-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939-2029 bp Feature: gene Location: 2095-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 04-2425 bp Feature: gene Location: 2545-3048 bp Feature: domain Description: InsE Location: 2704-2902 bp Feature: domain Description: InsE Location: 2704-2902 bp Feature: gene Location: 3090-3419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, InsE (COG2963)

Seq: UEBY01000200.1 Shigella sonnei strain 4028STDY6275214 genome assembly, contig: ERS1017794SCcontig000200, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192 3-2 034 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UEBY01000192.1 Shigella sonnei strain 4028STDY6275214 genome assembly, contig: ERS1017794SCcontig000192, whole genome shotgun sequence (6578 bp)
Overview 1 RT 1: 3556-6321 bp Neighborhood of RT #1 [3556, 6338] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 3556-3798 bp Feature: gene Location: 3970-4125 bp Feature: gene Location: 4151-4678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4157-4301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4157-43 01 bp Feature: domain Description: GIIM Note: maturase Location: 4385-4601 bp Feature: domain Description: GIIM Note: maturase Location: 43 85-4601 bp Feature: gene Location: 4688-4960 bp Feature: gene Location: 4977-6104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5277-5934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5277-593 4 bp Feature: gene Location: 6117-6338 bp Feature: domain Description: Tra5 Location: 6129-6321 bp Feature: domain Description: Tra5 Location: 6129-63 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)