myRT

myRT report for GCA_900489135.1_18787_7_50

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Seq: UEEV01000200.1 Shigella sonnei strain 4028STDY6275251 genome assembly, contig: ERS1017868SCcontig000200, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66-431 0 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-461 0 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UEEV01000160.1 Shigella sonnei strain 4028STDY6275251 genome assembly, contig: ERS1017868SCcontig000160, whole genome shotgun sequence (8848 bp)
Overview 1 RT 1: 4441-7738 bp Neighborhood of RT #1 [4441, 7806] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4441-5472 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_2 3 Location: 4519-4660 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: gene Location: 5616-6284 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: HTH_2 3 Location: 572 4-5811 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: gene Location: 6378-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: gene Location: 6648-7076 bp Feature: gene Location: 7090-7806 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: UEEV01000194.1 Shigella sonnei strain 4028STDY6275251 genome assembly, contig: ERS1017868SCcontig000194, whole genome shotgun sequence (6433 bp)
Overview 1 RT 1: 2-4562 bp Neighborhood of RT #1 [2, 4564] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 2-130 bp Feature: domain Description: PRK09409 Location: 5-128 bp Feature: domain Description: PRK09409 Location: 5-128 bp Feature: gene Location: 251-472 bp Feature: domain Description: Tra5 Location: 263-455 bp Feature: domain Description: Tra5 Location: 263 -455 bp Feature: gene Location: 485-1612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1442 bp Feature: gene Location: 1911-2438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917-2061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917-2061 bp Feature: domain Description: GIIM Note: maturase Location: 2145-2361 bp Feature: domain Description: GIIM Note: maturase Location: 2145-23 61 bp Feature: gene Location: 2791-3033 bp Feature: gene Location: 2945-4564 bp Feature: domain Description: ushA Location: 2960-4562 bp Feature: domain Description: ushA Location: 2960-4562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), ushA (PRK09558)