myRT

myRT report for GCA_900489265.1_18787_7_59

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Seq: UEEO01000203.1 Shigella sonnei strain 4028STDY6275260 genome assembly, contig: ERS1017883SCcontig000203, whole genome shotgun sequence (5215 bp)
Overview 1 RT 1: 2-4559 bp Neighborhood of RT #1 [2, 4561] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 2-127 bp Feature: domain Description: PRK09409 Location: 5-125 bp Feature: domain Description: PRK09409 Location: 5-1 25 bp Feature: gene Location: 248-469 bp Feature: domain Description: Tra5 Location: 260-452 bp Feature: domain Description: Tra5 Location: 260-452 bp Feature: gene Location: 482-1609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1 439 bp Feature: gene Location: 1908-2435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1914-2058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 4-2058 bp Feature: domain Description: GIIM Note: maturase Location: 2142-2358 bp Feature: domain Description: GIIM Note: maturase Location: 21 42-2358 bp Feature: gene Location: 2788-3030 bp Feature: gene Location: 2942-4561 bp Feature: domain Description: ushA Location: 2957-4559 bp Feature: domain Description: ushA Location: 2957-4559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: UEEO01000192.1 Shigella sonnei strain 4028STDY6275260 genome assembly, contig: ERS1017883SCcontig000192, whole genome shotgun sequence (5797 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192 3-2 034 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UEEO01000251.1 Shigella sonnei strain 4028STDY6275260 genome assembly, contig: ERS1017883SCcontig000251, whole genome shotgun sequence (3458 bp)
Overview 1 RT 1: 546-3069 bp Neighborhood of RT #1 [546, 3218] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 546-767 bp Feature: gene Location: 1043-1825 bp Feature: domain Description: DDE_Tnp_1 Location: 1049-1757 bp Feature: domain Description: DDE_Tnp_1 Location: 1049-1757 bp Feature: gene Location: 1851-2054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Feature: gene Location: 2115-2471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2124-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2124-2445 bp Feature: gene Location: 2565-3218 bp Feature: domain Description: HTH_23 Location: 2658-2745 bp Feature: domain Description: HTH_23 Location: 2658-2745 bp Feature: domain Description: InsE Location: 2874-3069 bp Feature: domain Description: InsE Location: 2874-3 069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)