myRT

myRT report for GCA_900490365.1_18787_5_53

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Seq: UEKV01000172.1 Shigella flexneri strain 4028STDY6275062 genome assembly, contig: ERS1017689SCcontig000172, whole genome shotgun sequence (5816 bp)
Overview 1 RT 1: 2566-5267 bp Neighborhood of RT #1 [2566, 5287] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2566-2721 bp Feature: gene Location: 2747-3118 bp Feature: domain Description: GIIM Note: maturase Location: 2825-3044 bp Feature: domain Description: GIIM Note: maturase Location: 2825-3044 bp Feature: gene Location: 3126-3929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426-3921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426-3921 bp Feature: gene Location: 3942-4142 bp Feature: domain Description: Tra5 Location: 3951-4125 bp Feature: domain Description: Tra5 Location: 3951 -41 25 bp Feature: gene Location: 4538-5287 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4613-5267 bp Feature: domain Description: PAP2_acid_phosphatase Location: 461 3-5267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UEKV01000157.1 Shigella flexneri strain 4028STDY6275062 genome assembly, contig: ERS1017689SCcontig000157, whole genome shotgun sequence (6776 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 744-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 005-2 116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 2 184-2 637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UEKV01000195.1 Shigella flexneri strain 4028STDY6275062 genome assembly, contig: ERS1017689SCcontig000195, whole genome shotgun sequence (4450 bp)
Overview 1 RT 1: 1-3250 bp Neighborhood of RT #1 [1, 3252] RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2366-2722 bp Feature: domain Description: PHA02517 Location: 2429-2576 bp Feature: domain Description: PHA02517 Location: 2429-2576 bp Feature: gene Location: 2605-3252 bp Feature: domain Description: PHA02517 Location: 2608-3250 bp Feature: domain Description: PHA02517 Location: 2608-3 250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)