myRT

myRT report for GCA_900490375.1_18787_4_33

Download annotations/find similar RTs

Seq: UELA01000090.1 Shigella flexneri strain 4028STDY6274946 genome assembly, contig: ERS1017575SCcontig000090, whole genome shotgun sequence (15419 bp)
Overview 1 RT 1: 12769-15390 bp Neighborhood of RT #1 [12769, 15416] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 12769-13254 bp Feature: domain Description: COG3547 Location: 12787-13240 bp Feature: domain Description: COG3547 Location: 1 2787-1 3240 bp Feature: gene Location: 13350-13517 bp Feature: gene Location: 13543-14760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13729-14383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3729-1 4383 bp Feature: domain Description: GIIM Note: maturase Location: 14461-14683 bp Feature: domain Description: GIIM Note: maturase Location: 1 4461 -1 4683 bp Feature: gene Location: 14771-15154 bp Feature: gene Location: 15237-15416 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15240-15390 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 5240-1 5390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UELA01000138.1 Shigella flexneri strain 4028STDY6274946 genome assembly, contig: ERS1017575SCcontig000138, whole genome shotgun sequence (9250 bp)
Overview 1 RT 1: 315-8829 bp Neighborhood of RT #1 [315, 8894] PAP2_acid_phosphatase Tra5 RVT-GII GIIM PHA02517 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 315-1064 bp Feature: domain Description: PAP2_acid_phosphatase Location: 390-1044 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 390-1044 bp Feature: gene Location: 1460-1660 bp Feature: domain Description: Tra5 Location: 1469-1643 bp Feature: domain Description: Tra5 Location: 1469-1643 bp Feature: gene Location: 1673-2476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2 468 bp Feature: gene Location: 2529-2855 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2781 bp Feature: domain Description: GIIM Note: maturase Location: 2 562 -2 781 bp Feature: gene Location: 3208-3450 bp Feature: gene Location: 5355-6002 bp Feature: domain Description: PHA02517 Location: 5358-6000 bp Feature: domain Description: PHA02 517 Location: 5358-6000 bp Feature: gene Location: 5885-6241 bp Feature: domain Description: PHA02517 Location: 5948-6095 bp Feature: domain Description: PHA02 517 Location: 5948-6095 bp Feature: gene Location: 6354-7877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6627-7359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662 7-7359 bp Feature: domain Description: GIIM Note: maturase Location: 7434-7632 bp Feature: domain Description: GIIM Note: maturase Location: 7434-7632 bp Feature: gene Location: 7831-8256 bp Feature: gene Location: 8469-8894 bp Feature: domain Description: PHA02517 Location: 8493-8829 bp Feature: domain Description: PHA02 517 Location: 8493-882 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), PHA02517 (putative transposase OrfB; Reviewed)