myRT

myRT report for GCA_900490385.1_18787_5_44

Download annotations/find similar RTs

Seq: UELC01000167.1 Shigella flexneri strain 4028STDY6275053 genome assembly, contig: ERS1017680SCcontig000167, whole genome shotgun sequence (5952 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UELC01000108.1 Shigella flexneri strain 4028STDY6275053 genome assembly, contig: ERS1017680SCcontig000108, whole genome shotgun sequence (11909 bp)
Overview 1 RT 1: 7860-11560 bp Neighborhood of RT #1 [7860, 11580] GIIM RVT-GII Tra5 RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 7860-8015 bp Feature: gene Location: 8041-8412 bp Feature: domain Description: GIIM Note: maturase Location: 8119-8338 bp Feature: domain Description: GIIM Note: maturase Location: 8119-8338 bp Feature: gene Location: 8420-9223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8720-9215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872 0-92 15 bp Feature: gene Location: 9236-9436 bp Feature: domain Description: Tra5 Location: 9245-9419 bp Feature: domain Description: Tra5 Location: 92 45-9419 bp Feature: gene Location: 9698-10222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9998-10127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9998-1012 7 bp Feature: gene Location: 10235-10435 bp Feature: domain Description: Tra5 Location: 10244-10418 bp Feature: domain Description: Tra5 Location: 102 44-10418 bp Feature: gene Location: 10831-11580 bp Feature: domain Description: PAP2_acid_phosphatase Location: 10906-11560 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 10906-11560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UELC01000113.1 Shigella flexneri strain 4028STDY6275053 genome assembly, contig: ERS1017680SCcontig000113, whole genome shotgun sequence (11321 bp)
Overview 1 RT 1: 3150-10566 bp Neighborhood of RT #1 [3150, 10568] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3150-3278 bp Feature: gene Location: 3368-3607 bp Feature: domain Description: PHA02517 Location: 3371-3542 bp Feature: domain Description: PHA02517 Location: 3 3 71-3 542 bp Feature: gene Location: 4199-5722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472-5204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472-5204 bp Feature: domain Description: GIIM Note: maturase Location: 5279-5477 bp Feature: domain Description: GIIM Note: maturase Location: 5279-5477 bp Feature: gene Location: 5899-6285 bp Feature: domain Description: PHA02517 Location: 5902-6283 bp Feature: domain Description: PHA02517 Location: 5902-6283 bp Feature: gene Location: 6450-10568 bp Feature: domain Description: ESPR Location: 6453-6522 bp Feature: domain Description: ESPR Location: 6453 -6522 bp Feature: domain Description: Peptidase_S6 Location: 6603-8775 bp Feature: domain Description: Peptidase_S6 Location: 6603 -8775 bp Feature: domain Description: autotrans_barl Location: 9339-10566 bp Feature: domain Description: autotrans_barl Location: 93 3 9-10566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)