myRT

myRT report for GCA_900490395.1_18787_4_16

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Seq: UELS01000121.1 Shigella flexneri strain 4028STDY6274929 genome assembly, contig: ERS1017558SCcontig000121, whole genome shotgun sequence (9889 bp)
Overview 1 RT 1: 2522-9886 bp Neighborhood of RT #1 [2522, 9886] group_II_RT_mat Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM Feature: gene Location: 2522-2902 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2654-2861 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2654-2861 bp Feature: gene Location: 3252-3452 bp Feature: domain Description: Tra5 Location: 3261-3435 bp Feature: domain Description: Tra5 Location: 3261 -3435 bp Feature: gene Location: 3465-4268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3765-4260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3765-4260 bp Feature: gene Location: 4321-4647 bp Feature: domain Description: GIIM Note: maturase Location: 4354-4573 bp Feature: domain Description: GIIM Note: maturase Location: 4354-4573 bp Feature: gene Location: 5000-5242 bp Feature: gene Location: 5154-6806 bp Feature: domain Description: ushA Location: 5166-6804 bp Feature: domain Description: ushA Location: 51 66-6804 bp Feature: gene Location: 7147-7593 bp Feature: domain Description: PHA02517 Location: 7150-7591 bp Feature: domain Description: PHA0251 7 Location: 71 50-7591 bp Feature: gene Location: 7710-9233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7983-8715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7983-871 5 bp Feature: domain Description: GIIM Note: maturase Location: 8790-8988 bp Feature: domain Description: GIIM Note: maturase Location: 8790-8988 bp Feature: gene Location: 9527-9886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UELS01000161.1 Shigella flexneri strain 4028STDY6274929 genome assembly, contig: ERS1017558SCcontig000161, whole genome shotgun sequence (5974 bp)
Overview 1 RT 1: 3219-5872 bp Neighborhood of RT #1 [3219, 5872] COG3547 RVT-GII GIIM Feature: gene Location: 3219-3704 bp Feature: domain Description: COG3547 Location: 3237-3690 bp Feature: domain Description: COG3547 Location: 32 37-3690 bp Feature: gene Location: 3800-3967 bp Feature: gene Location: 3993-5210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4179-4833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4179-4833 bp Feature: domain Description: GIIM Note: maturase Location: 4911-5133 bp Feature: domain Description: GIIM Note: maturase Location: 4911-5133 bp Feature: gene Location: 5221-5604 bp Feature: gene Location: 5678-5872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)