myRT

myRT report for GCA_900490405.1_18787_4_21

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Seq: UELP01000173.1 Shigella flexneri strain 4028STDY6274934 genome assembly, contig: ERS1017563SCcontig000173, whole genome shotgun sequence (5771 bp)
Overview 1 RT 1: 2734-5435 bp Neighborhood of RT #1 [2734, 5455] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2734-2889 bp Feature: gene Location: 2915-3286 bp Feature: domain Description: GIIM Note: maturase Location: 2993-3212 bp Feature: domain Description: GIIM Note: maturase Location: 2993-321 2 bp Feature: gene Location: 3294-4097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3594-4089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3594-4089 bp Feature: gene Location: 4110-4310 bp Feature: domain Description: Tra5 Location: 4119-4293 bp Feature: domain Description: Tra5 Location: 41 1 9-4293 bp Feature: gene Location: 4706-5455 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4781-5435 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4781 -5435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UELP01000016.1 Shigella flexneri strain 4028STDY6274934 genome assembly, contig: ERS1017563SCcontig000016, whole genome shotgun sequence (56363 bp)
Overview 1 RT 1: 45707-52884 bp Neighborhood of RT #1 [45707, 52949] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 45707-49825 bp Feature: domain Description: ESPR Location: 45710-45779 bp Feature: domain Description: ESPR Location: 45710-45779 bp Feature: domain Description: Peptidase_S6 Location: 45860-48032 bp Feature: domain Description: Peptidase_S6 Location: 45860-48032 bp Feature: domain Description: autotrans_barl Location: 48596-49823 bp Feature: domain Description: autotrans_barl Location: 48596-4982 3 bp Feature: gene Location: 49990-50376 bp Feature: domain Description: PHA02517 Location: 49993-50374 bp Feature: domain Description: PHA02 517 Location: 49993-50374 bp Feature: gene Location: 50553-52076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50826-51558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5082 6-51558 bp Feature: domain Description: GIIM Note: maturase Location: 51633-51831 bp Feature: domain Description: GIIM Note: maturase Location: 51633-51831 bp Feature: gene Location: 52030-52455 bp Feature: gene Location: 52668-52949 bp Feature: domain Description: PHA02517 Location: 52674-52884 bp Feature: domain Description: PHA02 517 Location: 52 674-52 884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UELP01000143.1 Shigella flexneri strain 4028STDY6274934 genome assembly, contig: ERS1017563SCcontig000143, whole genome shotgun sequence (8584 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)