myRT

myRT report for GCA_900490415.1_19646_6_34

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Seq: UELH01000161.1 Shigella sonnei strain 4028STDY6329997 genome assembly, contig: ERS1078856SCcontig000161, whole genome shotgun sequence (8848 bp)
Overview 1 RT 1: 4441-7738 bp Neighborhood of RT #1 [4441, 7806] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4441-5472 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_23 Location: 451 9-4660 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: HTH_33 Location: 4765-491 2 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: gene Location: 5616-6284 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: HTH_23 Location: 5724-581 1 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: domain Description: InsE Location: 5940-61 35 bp Feature: gene Location: 6378-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381 -661 2 bp Feature: gene Location: 6648-7076 bp Feature: gene Location: 7090-7806 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: UELH01000195.1 Shigella sonnei strain 4028STDY6329997 genome assembly, contig: ERS1078856SCcontig000195, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192 3-2 034 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UELH01000188.1 Shigella sonnei strain 4028STDY6329997 genome assembly, contig: ERS1078856SCcontig000188, whole genome shotgun sequence (6498 bp)
Overview 1 RT 1: 3560-6495 bp Neighborhood of RT #1 [3560, 6497] RVT-GII GIIM RVT-GII PRK09409 Feature: gene Location: 3560-3802 bp Feature: gene Location: 3974-4129 bp Feature: gene Location: 4155-4682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4161-4305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4161-43 05 bp Feature: domain Description: GIIM Note: maturase Location: 4389-4605 bp Feature: domain Description: GIIM Note: maturase Location: 43 89-4605 bp Feature: gene Location: 4692-4964 bp Feature: gene Location: 4981-6108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5281-5938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5281-593 8 bp Feature: gene Location: 6327-6497 bp Feature: domain Description: PRK09409 Location: 6330-6495 bp Feature: domain Description: PRK09409 Location: 63 3 0-6495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09409 (IS2 transposase TnpB; Reviewed)