myRT

myRT report for GCA_900496975.1_LMG_30378

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Seq: UFQC01000028.1 Achromobacter sp. LMG 30378 genome assembly, contig: 28, whole genome shotgun sequence (83793 bp)
Overview 1 RT 1: 21943-29153 bp Neighborhood of RT #1 [21943, 29182] PrlF_antitoxin TraI_2 TraI_2_C RVT_N RVT-GII GIIM HNHc DUF3363 ParD_like Feature: gene Location: 21943-22260 bp Feature: domain Description: PrlF_antitoxin Location: 21967-22246 bp Feature: domain Description: PrlF_antitoxin Location: 21 967-22246 bp Feature: gene Location: 22494-24428 bp Feature: domain Description: TraI_2 Location: 22650-23589 bp Feature: domain Description: TraI_2 Location: 22650-23589 bp Feature: domain Description: TraI_2_C Location: 24042-24411 bp Feature: domain Description: TraI_2_C Location: 24042-2441 1 bp Feature: gene Location: 24590-26281 bp Feature: RT Description: RVT_N Location: 24644-24884 bp Feature: RT Description: RVT_N Location: 24644-24884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24935-25583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24935-25583 bp Feature: domain Description: GIIM Note: maturase Location: 25634-25868 bp Feature: domain Description: GIIM Note: maturase Location: 25634-25868 bp Feature: domain Description: HNHc Note: nucleases Location: 26099-26246 bp Feature: domain Description: HNHc Note: nucleases Location: 26099-26246 bp Feature: gene Location: 26524-28881 bp Feature: domain Description: DUF3363 Location: 27757-28870 bp Feature: domain Description: DUF3363 Location: 27757-28870 bp Feature: gene Location: 28970-29182 bp Feature: domain Description: ParD_like Location: 28973-29153 bp Feature: domain Description: ParD_like Location: 28973-291 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrlF_antitoxin (pfam15937), TraI_2 (pfam07514), TraI_2_C (pfam07515), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3363 (pfam11843), ParD_like (pfam11903)

Seq: UFQC01000055.1 Achromobacter sp. LMG 30378 genome assembly, contig: 55, whole genome shotgun sequence (30424 bp)
Overview 1 RT 1: 241-3730 bp Neighborhood of RT #1 [241, 3750] RVT-GII GIIM PHA02517 PRK10337 Feature: gene Location: 241-1773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-1252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-12 52 bp Feature: domain Description: GIIM Note: maturase Location: 1348-1525 bp Feature: domain Description: GIIM Note: maturase Location: 1348-152 5 bp Feature: gene Location: 1890-2357 bp Feature: domain Description: PHA02517 Location: 1893-2325 bp Feature: domain Description: PHA02 517 Location: 1893-2 32 5 bp Feature: gene Location: 2416-3750 bp Feature: domain Description: PRK10337 Location: 2419-3730 bp Feature: domain Description: PRK10337 Location: 2 419-3730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10337 (sensor protein QseC; Provisional)

Seq: UFQC01000010.1 Achromobacter sp. LMG 30378 genome assembly, contig: 10, whole genome shotgun sequence (211727 bp)
Overview 1 RT 1: 32070-35166 bp Neighborhood of RT #1 [32070, 35166] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 32070-32495 bp Feature: domain Description: DUF1566 Location: 32247-32478 bp Feature: domain Description: DUF1566 Location: 3 2247-3 2478 bp Feature: gene Location: 32534-32935 bp Feature: domain Description: Avd_like Location: 32561-32879 bp Feature: domain Description: Avd_like Location: 3 2561-3 2879 bp Feature: gene Location: 33202-34308 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33385-34141 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 3 85-3 4141 bp Feature: gene Location: 34658-34891 bp Feature: gene Location: 34888-35166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs