myRT

myRT report for GCA_900498795.1_ASMTUEKL_44

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Seq: UIFB01000002.1 Klebsiella pneumoniae isolate ID_44 genome assembly, contig: NODE_2_length_777266_cov_35.3554_ID_271, whole genome shotgun sequence (777266 bp)
Overview 1 RT 1: 43214-49896 bp 2 RT 2: 502560-509729 bp Neighborhood of RT #1 [43214, 49896] COG3440 RVT-Retrons HTH_XRE Neighborhood of RT #2 [502560, 509746] EAL RVT-UG4 FimD FimC Feature: gene Location: 43214-44272 bp Feature: domain Description: COG3440 Location: 43844-44231 bp Feature: domain Description: COG3440 Location: 43844-44231 bp Feature: gene Location: 44471-48322 bp Feature: gene Location: 48363-49280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48459-49026 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48459-49026 bp Feature: gene Location: 49315-49605 bp Feature: domain Description: HTH_XRE Location: 49327-49492 bp Feature: domain Description: HTH_XRE Location: 49327-49492 bp Feature: gene Location: 49657-49896 bp Feature: gene Location: 502560-502766 bp Feature: gene Location: 502856-503710 bp Feature: domain Description: EAL Location: 503540-503693 bp Feature: domain Description: EAL Location: 503540-503693 bp Feature: gene Location: 504347-506377 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 504755-505199 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 504755-5051 99 bp Feature: gene Location: 506377-508986 bp Feature: domain Description: FimD Location: 506434-508975 bp Feature: domain Description: FimD Location: 506434-508975 bp Feature: gene Location: 509018-509746 bp Feature: domain Description: FimC Location: 509066-509729 bp Feature: domain Description: FimC Location: 509066-509729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3440 (Predicted restriction endonuclease ), RVT-Retrons, HTH_XRE (smart00530), EAL (smart00052), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: UIFB01000024.1 Klebsiella pneumoniae isolate ID_44 genome assembly, contig: NODE_24_length_15217_cov_106.643_ID_1241, whole genome shotgun sequence (15217 bp)
Overview 1 RT 1: 5209-10599 bp Neighborhood of RT #1 [5209, 10649] nhaA Rve RVT-GII GIIM PHA02517 Rve Feature: gene Location: 5209-6390 bp Feature: domain Description: nhaA Location: 5251-6379 bp Feature: domain Description: nhaA Location: 52 51-6379 bp Feature: gene Location: 6996-7712 bp Feature: domain Description: Rve Location: 7011-7656 bp Feature: domain Description: Rve Location: 7011-7656 bp Feature: gene Location: 7691-8980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7766-8462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7766-8462 bp Feature: domain Description: GIIM Note: maturase Location: 8537-8735 bp Feature: domain Description: GIIM Note: maturase Location: 8537-8735 bp Feature: gene Location: 9157-9543 bp Feature: domain Description: PHA02517 Location: 9160-9541 bp Feature: domain Description: PHA02 517 Location: 9160-9541 bp Feature: gene Location: 10254-10649 bp Feature: domain Description: Rve Location: 10269-10599 bp Feature: domain Description: Rve Location: 102 69-10599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nhaA (PRK14856), Rve (COG3316), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)