myRT

myRT report for GCA_900500135.1_1227A

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Seq: UILC01000029.1 Escherichia coli isolate 1227A genome assembly, contig: NODE_29_length_15561_cov_123.107, whole genome shotgun sequence (15561 bp)
Overview 1 RT 1: 2-7770 bp Neighborhood of RT #1 [2, 7793] fil_hemag_20aa fil_hemag_20aa RVT-GII RVT-GII PHA02517 COG3436 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 2-595 bp Feature: domain Description: fil_hemag_20aa Location: 8-80 bp Feature: domain Description: fil_hemag_20aa Location: 8-80 bp Feature: domain Description: fil_hemag_20aa Location: 491-572 bp Feature: domain Description: fil_hemag_20aa Location: 491 -572 bp Feature: gene Location: 882-1085 bp Feature: gene Location: 1206-2018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1479-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 479-1 935 bp Feature: gene Location: 2034-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040-2211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040-221 1 bp Feature: gene Location: 2415-2831 bp Feature: gene Location: 2893-3051 bp Feature: domain Description: PHA02517 Location: 2896-2998 bp Feature: domain Description: PHA0251 7 Location: 2896-2998 bp Feature: gene Location: 4407-5483 bp Feature: domain Description: COG3436 Location: 4719-5190 bp Feature: domain Description: COG3436 Location: 471 9-51 90 bp Feature: gene Location: 5459-5848 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5564-5807 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5564-5807 bp Feature: gene Location: 6300-7010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6501-7002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6501 -7002 bp Feature: gene Location: 7159-7530 bp Feature: domain Description: GIIM Note: maturase Location: 7231-7453 bp Feature: domain Description: GIIM Note: maturase Location: 7231 -7453 bp Feature: gene Location: 7647-7793 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7659-7770 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7659-7770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fil_hemag_20aa (TIGR01731), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: UILC01000022.1 Escherichia coli isolate 1227A genome assembly, contig: NODE_22_length_35923_cov_113.955, whole genome shotgun sequence (35923 bp)
Overview 1 RT 1: 15572-19687 bp Neighborhood of RT #1 [15572, 19687] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 15572-15724 bp Feature: domain Description: rve_2 Location: 15602-15710 bp Feature: domain Description: rve_2 Location: 15602 -15710 bp Feature: gene Location: 15997-16302 bp Feature: gene Location: 16345-17733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16675-17293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16675-172 93 bp Feature: domain Description: GIIM Note: maturase Location: 17341-17572 bp Feature: domain Description: GIIM Note: maturase Location: 17341-17572 bp Feature: gene Location: 18120-19511 bp Feature: domain Description: InsG Location: 18123-19044 bp Feature: domain Description: InsG Location: 1812 3-19044 bp Feature: domain Description: Transposase_20 Location: 19167-19413 bp Feature: domain Description: Transposase_2 0 Location: 19167-19413 bp Feature: gene Location: 19520-19687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: UILC01000002.1 Escherichia coli isolate 1227A genome assembly, contig: NODE_2_length_416458_cov_97.927, whole genome shotgun sequence (416458 bp)
Overview 1 RT 1: 23554-27296 bp Neighborhood of RT #1 [23554, 27307] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23554-24036 bp Feature: domain Description: SmpB Location: 23584-24031 bp Feature: domain Description: SmpB Location: 23 584-2403 1 bp Feature: gene Location: 24094-24336 bp Feature: gene Location: 24721-25494 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24856-25309 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24856-253 09 bp Feature: gene Location: 25898-26116 bp Feature: domain Description: PRK09678 Location: 25901-26099 bp Feature: domain Description: PRK09678 Location: 25901-26099 bp Feature: gene Location: 26207-27307 bp Feature: domain Description: D Location: 26213-27296 bp Feature: domain Description: D Location: 26213 -27296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)