myRT

myRT report for GCA_900507945.1_19646_2_74

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Seq: UJTN01000004.1 Klebsiella pneumoniae strain EuSCAPE_TR057 genome assembly, contig: 19646_274SCcontig000004, whole genome shotgun sequence (462166 bp)
Overview 1 RT 1: 355957-363574 bp Neighborhood of RT #1 [355957, 363609] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 355957-356208 bp Feature: gene Location: 356205-357074 bp Ori: SWW26650.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 356727-356898 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 356727-356898 bp Feature: gene Location: 357730-358830 bp Ori: SWW26651.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 357910-358444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35791 0-358444 bp Feature: gene Location: 358945-361191 bp Ori: SWW26652.1 Feature: domain Description: AAA_15 Location: 358948-359956 bp Feature: domain Description: AAA_1 5 Location: 358948-359956 bp Feature: gene Location: 362590-363609 bp Ori: SWW26653.1 Feature: domain Description: DUF4917 Location: 362650-363574 bp Feature: domain Description: DUF491 7 Location: 362650-363574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: UJTN01000027.1 Klebsiella pneumoniae strain EuSCAPE_TR057 genome assembly, contig: 19646_274SCcontig000027, whole genome shotgun sequence (9022 bp)
Overview 1 RT 1: 96-5219 bp Neighborhood of RT #1 [96, 5230] Phage_integrase COG3547 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 96-443 bp Ori: SWW33174.1 Gene: xerC_4 Feature: domain Description: Phage_integrase Location: 102-330 bp Feature: domain Description: Phage_integrase Location: 102 -330 bp Feature: gene Location: 743-1819 bp Ori: SWW33175.1 Feature: domain Description: COG3547 Location: 782-1703 bp Feature: domain Description: COG3547 Location: 782 -1703 bp Feature: gene Location: 2361-3884 bp Ori: SWW33176.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2634-3366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 634-3366 bp Feature: domain Description: GIIM Note: maturase Location: 3441-3639 bp Feature: domain Description: GIIM Note: maturase Location: 3441-3639 bp Feature: gene Location: 4476-4715 bp Ori: SWW33177.1 Feature: domain Description: PHA02517 Location: 4479-4650 bp Feature: domain Description: PHA02 517 Location: 4479-4650 bp Feature: gene Location: 4928-5230 bp Ori: SWW33178.1 Feature: domain Description: InsE Location: 4937-5219 bp Feature: domain Description: InsE Location: 4937-52 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: UJTN01000001.1 Klebsiella pneumoniae strain EuSCAPE_TR057 genome assembly, contig: 19646_274SCcontig000001, whole genome shotgun sequence (771311 bp)
Overview 1 RT 1: 25609-28671 bp Neighborhood of RT #1 [25609, 28688] PRK10724 SmpB RVT-UG11 PRK09678 Feature: gene Location: 25609-26046 bp Ori: SWW18708.1 Gene: ratA Feature: domain Description: PRK10724 Location: 25612-26041 bp Feature: domain Description: PRK10724 Location: 25612-26041 bp Feature: gene Location: 26196-26678 bp Ori: SWW18709.1 Gene: smpB Feature: domain Description: SmpB Location: 26226-26670 bp Feature: domain Description: SmpB Location: 26226-26670 bp Feature: gene Location: 27293-28066 bp Ori: SWW18710.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27428-27881 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27428-27881 bp Feature: gene Location: 28035-28208 bp Feature: gene Location: 28470-28688 bp Ori: SWW18712.1 Feature: domain Description: PRK09678 Location: 28473-28671 bp Feature: domain Description: PRK09678 Location: 28473 -28671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: UJTN01000023.1 Klebsiella pneumoniae strain EuSCAPE_TR057 genome assembly, contig: 19646_274SCcontig000023, whole genome shotgun sequence (20147 bp)
Overview 1 RT 1: 9227-15168 bp Neighborhood of RT #1 [9227, 15168] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 9227-10498 bp Ori: SWW33118.1 Gene: umuC_3 Feature: domain Description: umuC Location: 9230-10490 bp Feature: domain Description: umuC Location: 9230-104 90 bp Feature: gene Location: 10498-10929 bp Ori: SWW33119.1 Gene: umuD_4 Feature: domain Description: PRK10276 Location: 10549-10912 bp Feature: domain Description: PRK10276 Location: 1054 9-10912 bp Feature: gene Location: 11338-12822 bp Ori: SWW33120.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11740-12430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174 0-124 30 bp Feature: gene Location: 13292-14257 bp Ori: SWW33121.1 Gene: traC_5 Feature: domain Description: ArdC Location: 13418-14252 bp Feature: domain Description: ArdC Location: 134 18-14 252 bp Feature: gene Location: 14737-15168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)