myRT

myRT report for GCA_900510635.1_17870_3_14

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Seq: UKDU01000029.1 Klebsiella pneumoniae strain EuSCAPE_SK005 genome assembly, contig: 17870_314SCcontig000029, whole genome shotgun sequence (21929 bp)
Overview 1 RT 1: 6462-11484 bp Neighborhood of RT #1 [6462, 11492] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 6462-7427 bp Feature: domain Description: ArdC Location: 6588-7422 bp Feature: domain Description: ArdC Location: 6588-7422 bp Feature: gene Location: 7559-7828 bp Feature: gene Location: 7897-9384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8302-8992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8302-8992 bp Feature: gene Location: 9538-10221 bp Feature: domain Description: PRK10276 Location: 9841-10204 bp Feature: domain Description: PRK1 0276 Location: 9841 -1 0204 bp Feature: gene Location: 10221-11492 bp Feature: domain Description: umuC Location: 10224-11484 bp Feature: domain Description: umuC Location: 1 0224-1 1 484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: UKDU01000026.1 Klebsiella pneumoniae strain EuSCAPE_SK005 genome assembly, contig: 17870_314SCcontig000026, whole genome shotgun sequence (43412 bp)
Overview 1 RT 1: 31990-38843 bp Neighborhood of RT #1 [31990, 38860] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31990-32655 bp Feature: domain Description: INT_P4_C Location: 32095-32653 bp Feature: domain Description: INT_P4_C Location: 32 095-32 653 bp Feature: gene Location: 32916-33356 bp Feature: domain Description: Integrase_1 Location: 32922-33138 bp Feature: domain Description: Integrase_1 Location: 32 92 2 -33138 bp Feature: gene Location: 33413-35491 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33821-34265 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3382 1-342 65 bp Feature: gene Location: 35491-38100 bp Feature: domain Description: FimD Location: 35548-38089 bp Feature: domain Description: FimD Location: 35548-38089 bp Feature: gene Location: 38132-38860 bp Feature: domain Description: FimC Location: 38180-38843 bp Feature: domain Description: FimC Location: 38180-38843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: UKDU01000033.1 Klebsiella pneumoniae strain EuSCAPE_SK005 genome assembly, contig: 17870_314SCcontig000033, whole genome shotgun sequence (7430 bp)
Overview 1 RT 1: 89-3237 bp Neighborhood of RT #1 [89, 3302] RVT-GII GIIM PHA02517 Feature: gene Location: 89-220 bp Feature: gene Location: 469-675 bp Feature: gene Location: 762-2285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1035-1767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 5-1767 bp Feature: domain Description: GIIM Note: maturase Location: 1842-2040 bp Feature: domain Description: GIIM Note: maturase Location: 1842-2040 bp Feature: gene Location: 2239-2664 bp Feature: gene Location: 2877-3302 bp Feature: domain Description: PHA02517 Location: 2901-3237 bp Feature: domain Description: PHA02517 Location: 2901-3 23 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)