myRT

myRT report for GCA_900510825.1_17870_3_4

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Seq: UKEQ01000009.1 Klebsiella pneumoniae strain EuSCAPE_FR066 genome assembly, contig: 17870_34SCcontig000009, whole genome shotgun sequence (330255 bp)
Overview 1 RT 1: 291213-298081 bp Neighborhood of RT #1 [291213, 298083] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 291213-291941 bp Feature: domain Description: FimC Location: 291261-291924 bp Feature: domain Description: FimC Location: 291 261 -291 924 bp Feature: gene Location: 291973-294582 bp Feature: domain Description: FimD Location: 292030-294571 bp Feature: domain Description: FimD Location: 292030-294571 bp Feature: gene Location: 294582-296660 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 294990-295434 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 294990-295434 bp Feature: gene Location: 296717-297157 bp Feature: domain Description: Integrase_1 Location: 296723-296939 bp Feature: domain Description: Integrase_1 Location: 296723-296939 bp Feature: gene Location: 297418-298083 bp Feature: domain Description: INT_P4_C Location: 297523-298081 bp Feature: domain Description: INT_P4_C Location: 297523-298081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: UKEQ01000012.1 Klebsiella pneumoniae strain EuSCAPE_FR066 genome assembly, contig: 17870_34SCcontig000012, whole genome shotgun sequence (234946 bp)
Overview 1 RT 1: 29167-38875 bp Neighborhood of RT #1 [29167, 38895] AAA_13 AAA_13 COG0610 RVT-Retrons AAA_15 AAA_15 COG2958 Feature: gene Location: 29167-30345 bp Feature: domain Description: AAA_13 Location: 29260-29434 bp Feature: domain Description: AAA_13 Location: 2 92 60-2 9434 bp Feature: domain Description: AAA_13 Location: 29656-30229 bp Feature: domain Description: AAA_13 Location: 2 9656-302 2 9 bp Feature: gene Location: 30338-33457 bp Feature: domain Description: COG0610 Location: 30422-33434 bp Feature: domain Description: COG0610 Location: 3042 2 -33434 bp Feature: gene Location: 33999-35099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34140-34701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34140-34701 bp Feature: gene Location: 35272-37413 bp Feature: domain Description: AAA_15 Location: 35299-35716 bp Feature: domain Description: AAA_15 Location: 352 99-35716 bp Feature: domain Description: AAA_15 Location: 35854-36280 bp Feature: domain Description: AAA_15 Location: 35854-362 80 bp Feature: gene Location: 37963-38895 bp Feature: domain Description: COG2958 Location: 37981-38875 bp Feature: domain Description: COG2 958 Location: 37981-38875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_13 (pfam13166), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-Retrons, AAA_15 (pfam13175), COG2958 (Uncharacterized protein )