myRT

myRT report for GCA_900511405.1_17870_5_2

Download annotations/find similar RTs

Seq: UKGS01000036.1 Klebsiella pneumoniae strain EuSCAPE_AT031 genome assembly, contig: 17870_52SCcontig000036, whole genome shotgun sequence (11910 bp)
Overview 1 RT 1: 1496-6170 bp Neighborhood of RT #1 [1496, 6235] RVT-GII PHA02517 Feature: gene Location: 1496-3712 bp Feature: gene Location: 3766-4056 bp Feature: gene Location: 4421-5218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4694-5150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4694-51 50 bp Feature: gene Location: 5172-5597 bp Feature: gene Location: 5810-6235 bp Feature: domain Description: PHA02517 Location: 5834-6170 bp Feature: domain Description: PHA0251 7 Location: 5834-61 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: UKGS01000030.1 Klebsiella pneumoniae strain EuSCAPE_AT031 genome assembly, contig: 17870_52SCcontig000030, whole genome shotgun sequence (36284 bp)
Overview 1 RT 1: 25609-28671 bp Neighborhood of RT #1 [25609, 28688] PRK10724 SmpB RVT-UG11 PRK09678 Feature: gene Location: 25609-26046 bp Feature: domain Description: PRK10724 Location: 25612-26041 bp Feature: domain Description: PRK1072 4 Location: 2 5612 -2 6041 bp Feature: gene Location: 26196-26678 bp Feature: domain Description: SmpB Location: 26226-26670 bp Feature: domain Description: SmpB Location: 2 62 2 6-2 6670 bp Feature: gene Location: 27293-27592 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27296-27407 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 72 96-2 7407 bp Feature: gene Location: 28035-28223 bp Feature: gene Location: 28470-28688 bp Feature: domain Description: PRK09678 Location: 28473-28671 bp Feature: domain Description: PRK09678 Location: 2 8473-2 8671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: UKGS01000032.1 Klebsiella pneumoniae strain EuSCAPE_AT031 genome assembly, contig: 17870_52SCcontig000032, whole genome shotgun sequence (27395 bp)
Overview 1 RT 1: 25620-27170 bp Neighborhood of RT #1 [25620, 27394] PHA02517 RVT-GII GIIM Feature: gene Location: 25620-25826 bp Feature: gene Location: 26001-26405 bp Feature: domain Description: PHA02517 Location: 26004-26394 bp Feature: domain Description: PHA02517 Location: 26004-263 94 bp Feature: gene Location: 26570-27394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26660-26876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26660-26876 bp Feature: domain Description: GIIM Note: maturase Location: 26951-27170 bp Feature: domain Description: GIIM Note: maturase Location: 26951-27170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UKGS01000016.1 Klebsiella pneumoniae strain EuSCAPE_AT031 genome assembly, contig: 17870_52SCcontig000016, whole genome shotgun sequence (117043 bp)
Overview 1 RT 1: 97627-104079 bp Neighborhood of RT #1 [97627, 104079] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 97627-97932 bp Feature: gene Location: 98815-101091 bp Feature: domain Description: AAA_15 Location: 98848-99856 bp Feature: domain Description: AAA_15 Location: 9884 8-99856 bp Feature: gene Location: 101206-102306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101386-101920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101386-101920 bp Feature: gene Location: 102962-103798 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 103451-103622 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1034 51-103622 bp Feature: gene Location: 103828-104079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)