myRT

myRT report for GCA_900512525.1_18174_4_46

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Seq: UKKZ01000004.1 Klebsiella pneumoniae strain EuSCAPE_DE047 genome assembly, contig: 18174_446SCcontig000004, whole genome shotgun sequence (304486 bp)
Overview 1 RT 1: 265029-271897 bp Neighborhood of RT #1 [265029, 271899] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 265029-265757 bp Feature: domain Description: FimC Location: 265077-265740 bp Feature: domain Description: FimC Location: 265077-265740 bp Feature: gene Location: 265789-268398 bp Feature: domain Description: FimD Location: 265846-268387 bp Feature: domain Description: FimD Location: 265846-268387 bp Feature: gene Location: 268398-270476 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268806-269250 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268806-269250 bp Feature: gene Location: 270533-270973 bp Feature: domain Description: Integrase_1 Location: 270539-270755 bp Feature: domain Description: Integrase_1 Location: 270539-270755 bp Feature: gene Location: 271234-271899 bp Feature: domain Description: INT_P4_C Location: 271339-271897 bp Feature: domain Description: INT_P4_C Location: 271 339-271 897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: UKKZ01000016.1 Klebsiella pneumoniae strain EuSCAPE_DE047 genome assembly, contig: 18174_446SCcontig000016, whole genome shotgun sequence (112840 bp)
Overview 1 RT 1: 35078-42179 bp Neighborhood of RT #1 [35078, 42179] HTH_23 Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 35078-35554 bp Feature: domain Description: HTH_23 Location: 35156-35297 bp Feature: domain Description: HTH_2 3 Location: 35156-352 97 bp Feature: gene Location: 35975-36844 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 36497-36668 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 36497-36668 bp Feature: gene Location: 37500-38600 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37680-38214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37680-382 14 bp Feature: gene Location: 38715-40991 bp Feature: domain Description: AAA_15 Location: 38748-39756 bp Feature: domain Description: AAA_15 Location: 38748-39756 bp Feature: gene Location: 41874-42179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: UKKZ01000062.1 Klebsiella pneumoniae strain EuSCAPE_DE047 genome assembly, contig: 18174_446SCcontig000062, whole genome shotgun sequence (1850 bp)
Overview 1 RT 1: 2-1399 bp Neighborhood of RT #1 [2, 1791] RVT-GII Feature: gene Location: 2-307 bp Feature: gene Location: 382-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 709-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 709-13 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII