myRT

myRT report for GCA_900512605.1_18174_4_7

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Seq: UKLJ01000060.1 Klebsiella pneumoniae strain EuSCAPE_DE008 genome assembly, contig: 18174_47SCcontig000060, whole genome shotgun sequence (1801 bp)
Overview 1 RT 1: 1-1350 bp Neighborhood of RT #1 [1, 1742] RVT-GII Feature: gene Location: 1-258 bp Feature: gene Location: 333-1742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1 350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UKLJ01000017.1 Klebsiella pneumoniae strain EuSCAPE_DE008 genome assembly, contig: 18174_47SCcontig000017, whole genome shotgun sequence (112840 bp)
Overview 1 RT 1: 35078-42179 bp Neighborhood of RT #1 [35078, 42179] HTH_23 Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 35078-35554 bp Feature: domain Description: HTH_23 Location: 35156-35297 bp Feature: domain Description: HTH_2 3 Location: 35156-352 97 bp Feature: gene Location: 35975-36844 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 36497-36668 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 36497-36668 bp Feature: gene Location: 37500-38600 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37680-38214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37680-382 14 bp Feature: gene Location: 38715-40991 bp Feature: domain Description: AAA_15 Location: 38748-39756 bp Feature: domain Description: AAA_15 Location: 38748-39756 bp Feature: gene Location: 41874-42179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: UKLJ01000004.1 Klebsiella pneumoniae strain EuSCAPE_DE008 genome assembly, contig: 18174_47SCcontig000004, whole genome shotgun sequence (304291 bp)
Overview 1 RT 1: 264834-271702 bp Neighborhood of RT #1 [264834, 271704] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 264834-265562 bp Feature: domain Description: FimC Location: 264882-265545 bp Feature: domain Description: FimC Location: 264882-265545 bp Feature: gene Location: 265594-268203 bp Feature: domain Description: FimD Location: 265651-268192 bp Feature: domain Description: FimD Location: 265651-268192 bp Feature: gene Location: 268203-270281 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268611-269055 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268611-269055 bp Feature: gene Location: 270338-270778 bp Feature: domain Description: Integrase_1 Location: 270344-270560 bp Feature: domain Description: Integrase_1 Location: 2703 44-270560 bp Feature: gene Location: 271039-271704 bp Feature: domain Description: INT_P4_C Location: 271144-271702 bp Feature: domain Description: INT_P4_C Location: 271144-271702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)