myRT

myRT report for GCA_900513045.1_18174_5_124

Download annotations/find similar RTs

Seq: UKNG01000017.1 Klebsiella pneumoniae strain EuSCAPE_IT046 genome assembly, contig: 18174_5124SCcontig000017, whole genome shotgun sequence (142418 bp)
Overview 1 RT 1: 31990-38843 bp Neighborhood of RT #1 [31990, 38860] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31990-32655 bp Feature: domain Description: INT_P4_C Location: 32095-32653 bp Feature: domain Description: INT_P4_C Location: 32095-32653 bp Feature: gene Location: 32916-33356 bp Feature: domain Description: Integrase_1 Location: 32922-33138 bp Feature: domain Description: Integrase_1 Location: 32922-331 38 bp Feature: gene Location: 33413-35491 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33821-34265 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33821 -34265 bp Feature: gene Location: 35491-38100 bp Feature: domain Description: FimD Location: 35548-38089 bp Feature: domain Description: FimD Location: 35548-38089 bp Feature: gene Location: 38132-38860 bp Feature: domain Description: FimC Location: 38180-38843 bp Feature: domain Description: FimC Location: 381 80-38843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: UKNG01000037.1 Klebsiella pneumoniae strain EuSCAPE_IT046 genome assembly, contig: 18174_5124SCcontig000037, whole genome shotgun sequence (19809 bp)
Overview 1 RT 1: 5640-10662 bp Neighborhood of RT #1 [5640, 10670] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 5640-6605 bp Feature: domain Description: ArdC Location: 5766-6600 bp Feature: domain Description: ArdC Location: 5766-6600 bp Feature: gene Location: 6737-7006 bp Feature: gene Location: 7075-8562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7480-8170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7480-8170 bp Feature: gene Location: 8716-9399 bp Feature: domain Description: PRK10276 Location: 9019-9382 bp Feature: domain Description: PRK102 76 Location: 9019-9382 bp Feature: gene Location: 9399-10670 bp Feature: domain Description: umuC Location: 9402-10662 bp Feature: domain Description: umuC Location: 9402 -10662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)