myRT

myRT report for GCA_900514355.1_18174_6_114

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Seq: UKSD01000033.1 Klebsiella pneumoniae strain EuSCAPE_IT210 genome assembly, contig: 18174_6114SCcontig000033, whole genome shotgun sequence (8887 bp)
Overview 1 RT 1: 350-4180 bp Neighborhood of RT #1 [350, 4180] RVT-GII ArdC Feature: gene Location: 350-1834 bp Ori: SYD49111.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1 442 bp Feature: gene Location: 2304-3269 bp Ori: SYD49112.1 Gene: traC_5 Feature: domain Description: ArdC Location: 2430-3264 bp Feature: domain Description: ArdC Location: 2430-3264 bp Feature: gene Location: 3749-4180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ArdC (COG4227)

Seq: UKSD01000004.1 Klebsiella pneumoniae strain EuSCAPE_IT210 genome assembly, contig: 18174_6114SCcontig000004, whole genome shotgun sequence (505744 bp)
Overview 1 RT 1: 371615-379232 bp Neighborhood of RT #1 [371615, 379267] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 371615-371866 bp Feature: gene Location: 371863-372732 bp Ori: SYD44856.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 372385-372556 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 372 385-372 556 bp Feature: gene Location: 373388-374488 bp Ori: SYD44857.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 373568-374102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 373568-374102 bp Feature: gene Location: 374603-376849 bp Ori: SYD44858.1 Feature: domain Description: AAA_15 Location: 374606-375614 bp Feature: domain Description: AAA_15 Location: 374606-375614 bp Feature: gene Location: 378248-379267 bp Ori: SYD44859.1 Feature: domain Description: DUF4917 Location: 378308-379232 bp Feature: domain Description: DUF4917 Location: 378308-3792 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: UKSD01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT210 genome assembly, contig: 18174_6114SCcontig000001, whole genome shotgun sequence (771449 bp)
Overview 1 RT 1: 742774-745848 bp Neighborhood of RT #1 [742774, 745853] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 742774-742992 bp Ori: SYD43296.1 Feature: domain Description: PRK09678 Location: 742777-742975 bp Feature: domain Description: PRK09678 Location: 742777-742975 bp Feature: gene Location: 743254-743427 bp Feature: gene Location: 743396-744169 bp Ori: SYD43298.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 743531-743984 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 743 53 1-743 984 bp Feature: gene Location: 744784-745266 bp Ori: SYD43299.1 Gene: smpB Feature: domain Description: SmpB Location: 744814-745258 bp Feature: domain Description: SmpB Location: 744814-745258 bp Feature: gene Location: 745416-745853 bp Ori: SYD43300.1 Gene: ratA Feature: domain Description: PRK10724 Location: 745419-745848 bp Feature: domain Description: PRK10724 Location: 745419-745848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)