myRT

myRT report for GCA_900514705.1_18174_6_127

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Seq: UKTL01000051.1 Klebsiella pneumoniae strain EuSCAPE_IT223 genome assembly, contig: 18174_6127SCcontig000051, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 60-1913 bp Neighborhood of RT #1 [60, 1913] RVT-GII Feature: gene Location: 60-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1 1 55 bp Feature: gene Location: 1701-1913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UKTL01000002.1 Klebsiella pneumoniae strain EuSCAPE_IT223 genome assembly, contig: 18174_6127SCcontig000002, whole genome shotgun sequence (447724 bp)
Overview 1 RT 1: 419036-422111 bp Neighborhood of RT #1 [419036, 422116] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 419036-419254 bp Feature: domain Description: PRK09678 Location: 419039-419237 bp Feature: domain Description: PRK09678 Location: 419039-4192 37 bp Feature: gene Location: 419501-419689 bp Feature: gene Location: 420132-420431 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 420135-420246 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42 0135-42 02 46 bp Feature: gene Location: 421047-421529 bp Feature: domain Description: SmpB Location: 421077-421521 bp Feature: domain Description: SmpB Location: 42 1077-42 152 1 bp Feature: gene Location: 421679-422116 bp Feature: domain Description: PRK10724 Location: 421682-422111 bp Feature: domain Description: PRK1072 4 Location: 42 1682 -42 2 111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: UKTL01000007.1 Klebsiella pneumoniae strain EuSCAPE_IT223 genome assembly, contig: 18174_6127SCcontig000007, whole genome shotgun sequence (325457 bp)
Overview 1 RT 1: 193499-198839 bp 2 RT 2: 286469-292195 bp Neighborhood of RT #1 [193499, 198839] TIGR02646 COG3950 RVT-Retrons Neighborhood of RT #2 [286469, 292413] FimC FimD RVT-UG4 Integrase_1 Feature: gene Location: 193499-194146 bp Feature: domain Description: TIGR02646 Location: 193568-193955 bp Feature: domain Description: TIGR02646 Location: 193 568-193 955 bp Feature: gene Location: 194149-195804 bp Feature: domain Description: COG3950 Location: 194350-195772 bp Feature: domain Description: COG3 950 Location: 1943 50-195772 bp Feature: gene Location: 195801-196733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 195903-196500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 195903 -196500 bp Feature: gene Location: 197427-197585 bp Feature: gene Location: 197841-198839 bp Feature: gene Location: 286469-287197 bp Feature: domain Description: FimC Location: 286502-287180 bp Feature: domain Description: FimC Location: 286502-287180 bp Feature: gene Location: 287229-289838 bp Feature: domain Description: FimD Location: 287286-289827 bp Feature: domain Description: FimD Location: 287286-289827 bp Feature: gene Location: 289838-291682 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 290246-290690 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 290246-290690 bp Feature: gene Location: 291722-291958 bp Feature: gene Location: 291973-292413 bp Feature: domain Description: Integrase_1 Location: 291979-292195 bp Feature: domain Description: Integrase_1 Location: 291979-292195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835)

Seq: UKTL01000041.1 Klebsiella pneumoniae strain EuSCAPE_IT223 genome assembly, contig: 18174_6127SCcontig000041, whole genome shotgun sequence (6614 bp)
Overview 1 RT 1: 4287-6528 bp Neighborhood of RT #1 [4287, 6563] AfaD-like zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII Feature: gene Location: 4287-4736 bp Feature: domain Description: AfaD-like Location: 4383-4722 bp Feature: domain Description: AfaD-like Location: 4 383-4 722 bp Feature: gene Location: 4854-5831 bp Feature: domain Description: zf-ISL3 Location: 4986-5112 bp Feature: domain Description: zf-ISL3 Location: 4 986-5112 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 5130-5277 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 5130-5277 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 5328-5802 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 5328-5802 bp Feature: gene Location: 5871-6563 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 5877-6033 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 5877-6033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6411-6528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 11-6528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AfaD-like (cd18776), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII