myRT

myRT report for GCA_900515895.1_18174_7_52

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Seq: UKYB01000008.1 Klebsiella pneumoniae strain EuSCAPE_IT321 genome assembly, contig: 18174_752SCcontig000008, whole genome shotgun sequence (325457 bp)
Overview 1 RT 1: 193499-198839 bp 2 RT 2: 287229-293337 bp Neighborhood of RT #1 [193499, 198839] TIGR02646 COG3950 RVT-Retrons Neighborhood of RT #2 [287229, 293339] PapC_N FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 193499-194146 bp Feature: domain Description: TIGR02646 Location: 193568-193955 bp Feature: domain Description: TIGR02646 Location: 1 93568-1 93955 bp Feature: gene Location: 194149-195804 bp Feature: domain Description: COG3950 Location: 194350-195772 bp Feature: domain Description: COG3950 Location: 1 94350-1 95772 bp Feature: gene Location: 195801-196733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 195903-196500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 95903-1 96500 bp Feature: gene Location: 197427-197585 bp Feature: gene Location: 197841-198839 bp Feature: gene Location: 287229-287579 bp Feature: domain Description: PapC_N Location: 287355-287574 bp Feature: domain Description: PapC_N Location: 287355-287574 bp Feature: gene Location: 287598-289838 bp Feature: domain Description: FimD Location: 287625-289827 bp Feature: domain Description: FimD Location: 287625-289827 bp Feature: gene Location: 289838-291916 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 290246-290690 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 290246-290690 bp Feature: gene Location: 291973-292413 bp Feature: domain Description: Integrase_1 Location: 291979-292195 bp Feature: domain Description: Integrase_1 Location: 291 979-2921 95 bp Feature: gene Location: 292674-293339 bp Feature: domain Description: INT_P4_C Location: 292779-293337 bp Feature: domain Description: INT_P4_C Location: 292779-293337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PapC_N (pfam13954), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: UKYB01000012.1 Klebsiella pneumoniae strain EuSCAPE_IT321 genome assembly, contig: 18174_752SCcontig000012, whole genome shotgun sequence (127336 bp)
Overview 1 RT 1: 44463-47534 bp Neighborhood of RT #1 [44463, 47548] DDE_Tnp_ISL3 RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 AfaD-like Feature: gene Location: 44463-44597 bp Feature: gene Location: 44732-45094 bp Feature: gene Location: 45284-45964 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 45290-45446 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 452 90-45446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45824-45962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582 4-45962 bp Feature: gene Location: 46004-46981 bp Feature: domain Description: zf-ISL3 Location: 46136-46262 bp Feature: domain Description: zf-ISL3 Location: 46136-462 62 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 46280-46427 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 462 80-4642 7 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 46478-46952 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 46478-46952 bp Feature: gene Location: 47099-47548 bp Feature: domain Description: AfaD-like Location: 47195-47534 bp Feature: domain Description: AfaD-like Location: 47195-47534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), AfaD-like (cd18776)