myRT

myRT report for GCA_900516615.1_18174_8_15

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Seq: ULAX01000013.1 Klebsiella pneumoniae strain EuSCAPE_HU009 genome assembly, contig: 18174_815SCcontig000013, whole genome shotgun sequence (194892 bp)
Overview 1 RT 1: 166205-169243 bp Neighborhood of RT #1 [166205, 169243] PRK09678 RVT-UG11 SmpB Feature: gene Location: 166205-166423 bp Feature: domain Description: PRK09678 Location: 166208-166406 bp Feature: domain Description: PRK09678 Location: 1 66208-1 66406 bp Feature: gene Location: 166670-166858 bp Feature: gene Location: 167301-167600 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 167304-167415 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 67304-1 6741 5 bp Feature: gene Location: 168216-168698 bp Feature: domain Description: SmpB Location: 168246-168690 bp Feature: domain Description: SmpB Location: 1 68246-1 68690 bp Feature: gene Location: 168830-169243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668)

Seq: ULAX01000036.1 Klebsiella pneumoniae strain EuSCAPE_HU009 genome assembly, contig: 18174_815SCcontig000036, whole genome shotgun sequence (15635 bp)
Overview 1 RT 1: 7608-10816 bp Neighborhood of RT #1 [7608, 10816] PRK10276 RVT-GII Feature: gene Location: 7608-8033 bp Feature: domain Description: PRK10276 Location: 7611-8019 bp Feature: domain Description: PRK102 76 Location: 7611-8019 bp Feature: gene Location: 8151-8384 bp Feature: gene Location: 8435-9970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9578 bp Feature: gene Location: 10204-10434 bp Feature: gene Location: 10493-10816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: ULAX01000027.1 Klebsiella pneumoniae strain EuSCAPE_HU009 genome assembly, contig: 18174_815SCcontig000027, whole genome shotgun sequence (27819 bp)
Overview 1 RT 1: 10438-15463 bp Neighborhood of RT #1 [10438, 15468] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 10438-11709 bp Feature: domain Description: umuC Location: 10441-11701 bp Feature: domain Description: umuC Location: 10441-11701 bp Feature: gene Location: 11709-12392 bp Feature: domain Description: PRK10276 Location: 12012-12375 bp Feature: domain Description: PRK10276 Location: 12012-123 75 bp Feature: gene Location: 12546-14033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12951-13641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12951-13 641 bp Feature: gene Location: 14102-14371 bp Feature: gene Location: 14503-15468 bp Feature: domain Description: ArdC Location: 14629-15463 bp Feature: domain Description: ArdC Location: 14629-15463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: ULAX01000017.1 Klebsiella pneumoniae strain EuSCAPE_HU009 genome assembly, contig: 18174_815SCcontig000017, whole genome shotgun sequence (132975 bp)
Overview 1 RT 1: 31990-38843 bp Neighborhood of RT #1 [31990, 38860] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31990-32655 bp Feature: domain Description: INT_P4_C Location: 32095-32653 bp Feature: domain Description: INT_P4 _C Location: 32095-32653 bp Feature: gene Location: 32916-33356 bp Feature: domain Description: Integrase_1 Location: 32922-33138 bp Feature: domain Description: Integrase_1 Location: 32922-33138 bp Feature: gene Location: 33413-35491 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33821-34265 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33821-34 265 bp Feature: gene Location: 35491-38100 bp Feature: domain Description: FimD Location: 35548-38089 bp Feature: domain Description: FimD Location: 3554 8-38089 bp Feature: gene Location: 38132-38860 bp Feature: domain Description: FimC Location: 38180-38843 bp Feature: domain Description: FimC Location: 38180-3884 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: ULAX01000052.1 Klebsiella pneumoniae strain EuSCAPE_HU009 genome assembly, contig: 18174_815SCcontig000052, whole genome shotgun sequence (3097 bp)
Overview 1 RT 1: 2-2628 bp Neighborhood of RT #1 [2, 2873] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 2-277 bp Feature: domain Description: InsE Location: 11-263 bp Feature: domain Description: InsE Location: 11-263 bp Feature: gene Location: 333-758 bp Feature: domain Description: PHA02517 Location: 357-693 bp Feature: domain Description: PHA025 17 Location: 35 7-693 bp Feature: gene Location: 1350-2873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-235 5 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2628 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)