myRT

myRT report for GCA_900516745.1_18174_8_19

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Seq: ULBI01000016.1 Klebsiella pneumoniae strain EuSCAPE_HU013 genome assembly, contig: 18174_819SCcontig000016, whole genome shotgun sequence (151711 bp)
Overview 1 RT 1: 112852-119720 bp Neighborhood of RT #1 [112852, 119722] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112852-113580 bp Feature: domain Description: FimC Location: 112900-113563 bp Feature: domain Description: FimC Location: 1 1 2900-1 1 3563 bp Feature: gene Location: 113612-116221 bp Feature: domain Description: FimD Location: 113669-116210 bp Feature: domain Description: FimD Location: 1 1 3669-1 1 621 0 bp Feature: gene Location: 116221-118299 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116629-117073 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6629-1 1 7073 bp Feature: gene Location: 118356-118796 bp Feature: domain Description: Integrase_1 Location: 118362-118578 bp Feature: domain Description: Integrase_1 Location: 1 1 8362-1 1 8578 bp Feature: gene Location: 119057-119722 bp Feature: domain Description: INT_P4_C Location: 119162-119720 bp Feature: domain Description: INT_P4_C Location: 1 1 91 62-1 1 9720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: ULBI01000013.1 Klebsiella pneumoniae strain EuSCAPE_HU013 genome assembly, contig: 18174_819SCcontig000013, whole genome shotgun sequence (195054 bp)
Overview 1 RT 1: 166367-169405 bp Neighborhood of RT #1 [166367, 169405] PRK09678 RVT-UG11 SmpB Feature: gene Location: 166367-166585 bp Feature: domain Description: PRK09678 Location: 166370-166568 bp Feature: domain Description: PRK09678 Location: 166370-166568 bp Feature: gene Location: 166832-167020 bp Feature: gene Location: 167463-167762 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 167466-167577 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 167466-167577 bp Feature: gene Location: 168378-168860 bp Feature: domain Description: SmpB Location: 168408-168852 bp Feature: domain Description: SmpB Location: 168408-168852 bp Feature: gene Location: 168992-169405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668)

Seq: ULBI01000037.1 Klebsiella pneumoniae strain EuSCAPE_HU013 genome assembly, contig: 18174_819SCcontig000037, whole genome shotgun sequence (15635 bp)
Overview 1 RT 1: 7608-10816 bp Neighborhood of RT #1 [7608, 10816] PRK10276 RVT-GII Feature: gene Location: 7608-8033 bp Feature: domain Description: PRK10276 Location: 7611-8019 bp Feature: domain Description: PRK10276 Location: 7611-8019 bp Feature: gene Location: 8151-8384 bp Feature: gene Location: 8435-9970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9578 bp Feature: gene Location: 10204-10434 bp Feature: gene Location: 10493-10816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: ULBI01000032.1 Klebsiella pneumoniae strain EuSCAPE_HU013 genome assembly, contig: 18174_819SCcontig000032, whole genome shotgun sequence (26610 bp)
Overview 1 RT 1: 9229-14254 bp Neighborhood of RT #1 [9229, 14259] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 9229-10500 bp Feature: domain Description: umuC Location: 9232-10492 bp Feature: domain Description: umuC Location: 9232-104 92 bp Feature: gene Location: 10500-11183 bp Feature: domain Description: PRK10276 Location: 10803-11166 bp Feature: domain Description: PRK10276 Location: 10803-11166 bp Feature: gene Location: 11337-12824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11742-12432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174 2-124 32 bp Feature: gene Location: 12893-13162 bp Feature: gene Location: 13294-14259 bp Feature: domain Description: ArdC Location: 13420-14254 bp Feature: domain Description: ArdC Location: 134 20-14 254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: ULBI01000044.1 Klebsiella pneumoniae strain EuSCAPE_HU013 genome assembly, contig: 18174_819SCcontig000044, whole genome shotgun sequence (5414 bp)
Overview 1 RT 1: 2029-5396 bp Neighborhood of RT #1 [2029, 5396] Tra5 RVT-GII GIIM Feature: gene Location: 2029-2718 bp Feature: domain Description: Tra5 Location: 2134-2560 bp Feature: domain Description: Tra5 Location: 2134-25 60 bp Feature: gene Location: 2870-3055 bp Feature: gene Location: 3142-4665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3415-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3415 -4147 bp Feature: domain Description: GIIM Note: maturase Location: 4222-4420 bp Feature: domain Description: GIIM Note: maturase Location: 4222-4420 bp Feature: gene Location: 4959-5396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388)