myRT

myRT report for GCA_900516825.1_18174_8_29

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Seq: ULBQ01000013.1 Klebsiella pneumoniae strain EuSCAPE_HU023 genome assembly, contig: 18174_829SCcontig000013, whole genome shotgun sequence (195030 bp)
Overview 1 RT 1: 166343-169381 bp Neighborhood of RT #1 [166343, 169381] PRK09678 RVT-UG11 SmpB Feature: gene Location: 166343-166561 bp Feature: domain Description: PRK09678 Location: 166346-166544 bp Feature: domain Description: PRK09678 Location: 1 66346-1 66544 bp Feature: gene Location: 166808-166996 bp Feature: gene Location: 167439-167738 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 167442-167553 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 67442-1 67553 bp Feature: gene Location: 168354-168836 bp Feature: domain Description: SmpB Location: 168384-168828 bp Feature: domain Description: SmpB Location: 1 68384-1 68828 bp Feature: gene Location: 168968-169381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668)

Seq: ULBQ01000036.1 Klebsiella pneumoniae strain EuSCAPE_HU023 genome assembly, contig: 18174_829SCcontig000036, whole genome shotgun sequence (15611 bp)
Overview 1 RT 1: 7608-10792 bp Neighborhood of RT #1 [7608, 10792] PRK10276 RVT-GII Feature: gene Location: 7608-8033 bp Feature: domain Description: PRK10276 Location: 7611-8019 bp Feature: domain Description: PRK102 76 Location: 7611-8019 bp Feature: gene Location: 8151-8384 bp Feature: gene Location: 8435-9946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9554 bp Feature: gene Location: 10180-10410 bp Feature: gene Location: 10469-10792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: ULBQ01000016.1 Klebsiella pneumoniae strain EuSCAPE_HU023 genome assembly, contig: 18174_829SCcontig000016, whole genome shotgun sequence (151710 bp)
Overview 1 RT 1: 112851-119719 bp Neighborhood of RT #1 [112851, 119721] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112851-113579 bp Feature: domain Description: FimC Location: 112899-113562 bp Feature: domain Description: FimC Location: 112899-113 562 bp Feature: gene Location: 113611-116220 bp Feature: domain Description: FimD Location: 113668-116209 bp Feature: domain Description: FimD Location: 113 668-116209 bp Feature: gene Location: 116220-118298 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116628-117072 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116628-117072 bp Feature: gene Location: 118355-118795 bp Feature: domain Description: Integrase_1 Location: 118361-118577 bp Feature: domain Description: Integrase_1 Location: 1183 61-118577 bp Feature: gene Location: 119056-119721 bp Feature: domain Description: INT_P4_C Location: 119161-119719 bp Feature: domain Description: INT_P4_C Location: 119161-119719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: ULBQ01000048.1 Klebsiella pneumoniae strain EuSCAPE_HU023 genome assembly, contig: 18174_829SCcontig000048, whole genome shotgun sequence (4161 bp)
Overview 1 RT 1: 321-2576 bp Neighborhood of RT #1 [321, 2576] RVT-Retrons CspC Feature: gene Location: 321-476 bp Feature: gene Location: 566-748 bp Feature: gene Location: 770-1909 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 914-1469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 914 -14 69 bp Feature: gene Location: 1914-2117 bp Feature: domain Description: CspC Location: 1917-2112 bp Feature: domain Description: CspC Location: 1917-2112 bp Feature: gene Location: 2376-2576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)

Seq: ULBQ01000058.1 Klebsiella pneumoniae strain EuSCAPE_HU023 genome assembly, contig: 18174_829SCcontig000058, whole genome shotgun sequence (2270 bp)
Overview 1 RT 1: 91-2267 bp Neighborhood of RT #1 [91, 2267] RVT-GII GIIM Feature: gene Location: 91-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-1096 bp Feature: domain Description: GIIM Note: maturase Location: 1171-1369 bp Feature: domain Description: GIIM Note: maturase Location: 1171-1369 bp Feature: gene Location: 1908-2267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ULBQ01000030.1 Klebsiella pneumoniae strain EuSCAPE_HU023 genome assembly, contig: 18174_829SCcontig000030, whole genome shotgun sequence (27819 bp)
Overview 1 RT 1: 10438-15463 bp Neighborhood of RT #1 [10438, 15468] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 10438-11709 bp Feature: domain Description: umuC Location: 10441-11701 bp Feature: domain Description: umuC Location: 10441-11701 bp Feature: gene Location: 11709-12392 bp Feature: domain Description: PRK10276 Location: 12012-12375 bp Feature: domain Description: PRK10276 Location: 12012-12375 bp Feature: gene Location: 12546-14033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12951-13641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12951-136 41 bp Feature: gene Location: 14102-14371 bp Feature: gene Location: 14503-15468 bp Feature: domain Description: ArdC Location: 14629-15463 bp Feature: domain Description: ArdC Location: 146 29-1546 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)