myRT

myRT report for GCA_900516885.1_18174_8_31

Download annotations/find similar RTs

Seq: ULBW01000015.1 Klebsiella pneumoniae strain EuSCAPE_HU025 genome assembly, contig: 18174_831SCcontig000015, whole genome shotgun sequence (151711 bp)
Overview 1 RT 1: 112852-119720 bp Neighborhood of RT #1 [112852, 119722] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112852-113580 bp Feature: domain Description: FimC Location: 112900-113563 bp Feature: domain Description: FimC Location: 1 1 2900-1 1 3563 bp Feature: gene Location: 113612-116221 bp Feature: domain Description: FimD Location: 113669-116210 bp Feature: domain Description: FimD Location: 1 1 3669-1 1 621 0 bp Feature: gene Location: 116221-118299 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116629-117073 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6629-1 1 7073 bp Feature: gene Location: 118356-118796 bp Feature: domain Description: Integrase_1 Location: 118362-118578 bp Feature: domain Description: Integrase_1 Location: 1 1 8362-1 1 8578 bp Feature: gene Location: 119057-119722 bp Feature: domain Description: INT_P4_C Location: 119162-119720 bp Feature: domain Description: INT_P4_C Location: 1 1 91 62-1 1 9720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: ULBW01000028.1 Klebsiella pneumoniae strain EuSCAPE_HU025 genome assembly, contig: 18174_831SCcontig000028, whole genome shotgun sequence (27819 bp)
Overview 1 RT 1: 10438-15463 bp Neighborhood of RT #1 [10438, 15468] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 10438-11709 bp Feature: domain Description: umuC Location: 10441-11701 bp Feature: domain Description: umuC Location: 10441-11701 bp Feature: gene Location: 11709-12392 bp Feature: domain Description: PRK10276 Location: 12012-12375 bp Feature: domain Description: PRK102 76 Location: 12 012 -12 375 bp Feature: gene Location: 12546-14033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12951-13641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 951-13641 bp Feature: gene Location: 14102-14371 bp Feature: gene Location: 14503-15468 bp Feature: domain Description: ArdC Location: 14629-15463 bp Feature: domain Description: ArdC Location: 1462 9-15463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: ULBW01000034.1 Klebsiella pneumoniae strain EuSCAPE_HU025 genome assembly, contig: 18174_831SCcontig000034, whole genome shotgun sequence (15635 bp)
Overview 1 RT 1: 7608-10816 bp Neighborhood of RT #1 [7608, 10816] PRK10276 RVT-GII Feature: gene Location: 7608-8033 bp Feature: domain Description: PRK10276 Location: 7611-8019 bp Feature: domain Description: PRK10276 Location: 7611-8019 bp Feature: gene Location: 8151-8384 bp Feature: gene Location: 8435-9970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8840-9578 bp Feature: gene Location: 10204-10434 bp Feature: gene Location: 10493-10816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: ULBW01000041.1 Klebsiella pneumoniae strain EuSCAPE_HU025 genome assembly, contig: 18174_831SCcontig000041, whole genome shotgun sequence (5414 bp)
Overview 1 RT 1: 2029-5396 bp Neighborhood of RT #1 [2029, 5396] Tra5 RVT-GII GIIM Feature: gene Location: 2029-2718 bp Feature: domain Description: Tra5 Location: 2134-2560 bp Feature: domain Description: Tra5 Location: 2134 -2560 bp Feature: gene Location: 2870-3055 bp Feature: gene Location: 3142-4665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3415-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 15-4 14 7 bp Feature: domain Description: GIIM Note: maturase Location: 4222-4420 bp Feature: domain Description: GIIM Note: maturase Location: 4 222-4 4 20 bp Feature: gene Location: 4959-5396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388)