myRT

myRT report for GCA_900517005.1_18174_8_52

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Seq: ULCI01000033.1 Klebsiella pneumoniae strain EuSCAPE_HU047 genome assembly, contig: 18174_852SCcontig000033, whole genome shotgun sequence (25213 bp)
Overview 1 RT 1: 10438-15463 bp Neighborhood of RT #1 [10438, 15468] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 10438-11709 bp Feature: domain Description: umuC Location: 10441-11701 bp Feature: domain Description: umuC Location: 1 0441 -1 1 701 bp Feature: gene Location: 11709-12392 bp Feature: domain Description: PRK10276 Location: 12012-12375 bp Feature: domain Description: PRK1 0276 Location: 1 201 2-1 2375 bp Feature: gene Location: 12546-14033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12951-13641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2951 -1 3641 bp Feature: gene Location: 14102-14371 bp Feature: gene Location: 14503-15468 bp Feature: domain Description: ArdC Location: 14629-15463 bp Feature: domain Description: ArdC Location: 1 4629-1 5463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: ULCI01000048.1 Klebsiella pneumoniae strain EuSCAPE_HU047 genome assembly, contig: 18174_852SCcontig000048, whole genome shotgun sequence (5437 bp)
Overview 1 RT 1: 2052-5419 bp Neighborhood of RT #1 [2052, 5419] Tra5 RVT-GII GIIM Feature: gene Location: 2052-2741 bp Feature: domain Description: Tra5 Location: 2157-2583 bp Feature: domain Description: Tra5 Location: 2 157-2 583 bp Feature: gene Location: 2893-3078 bp Feature: gene Location: 3165-4688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-4170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-4170 bp Feature: domain Description: GIIM Note: maturase Location: 4245-4443 bp Feature: domain Description: GIIM Note: maturase Location: 42 45-4443 bp Feature: gene Location: 4982-5419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: ULCI01000039.1 Klebsiella pneumoniae strain EuSCAPE_HU047 genome assembly, contig: 18174_852SCcontig000039, whole genome shotgun sequence (15635 bp)
Overview 1 RT 1: 4720-8014 bp Neighborhood of RT #1 [4720, 8028] RVT-GII PRK10276 Feature: gene Location: 4720-4935 bp Feature: gene Location: 5202-5432 bp Feature: gene Location: 5666-7201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6071-6809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6071-6809 bp Feature: gene Location: 7252-7485 bp Feature: gene Location: 7603-8028 bp Feature: domain Description: PRK10276 Location: 7606-8014 bp Feature: domain Description: PRK10276 Location: 7606-8014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: ULCI01000017.1 Klebsiella pneumoniae strain EuSCAPE_HU047 genome assembly, contig: 18174_852SCcontig000017, whole genome shotgun sequence (151711 bp)
Overview 1 RT 1: 112852-119720 bp Neighborhood of RT #1 [112852, 119722] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112852-113580 bp Feature: domain Description: FimC Location: 112900-113563 bp Feature: domain Description: FimC Location: 112900-113563 bp Feature: gene Location: 113612-116221 bp Feature: domain Description: FimD Location: 113669-116210 bp Feature: domain Description: FimD Location: 113669-116210 bp Feature: gene Location: 116221-118299 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116629-117073 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116629-117073 bp Feature: gene Location: 118356-118796 bp Feature: domain Description: Integrase_1 Location: 118362-118578 bp Feature: domain Description: Integrase_1 Location: 118362-118578 bp Feature: gene Location: 119057-119722 bp Feature: domain Description: INT_P4_C Location: 119162-119720 bp Feature: domain Description: INT_P4 _C Location: 119162-119720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: ULCI01000014.1 Klebsiella pneumoniae strain EuSCAPE_HU047 genome assembly, contig: 18174_852SCcontig000014, whole genome shotgun sequence (195030 bp)
Overview 1 RT 1: 166343-169381 bp Neighborhood of RT #1 [166343, 169381] PRK09678 RVT-UG11 SmpB Feature: gene Location: 166343-166561 bp Feature: domain Description: PRK09678 Location: 166346-166544 bp Feature: domain Description: PRK09678 Location: 166346-1665 44 bp Feature: gene Location: 166808-166996 bp Feature: gene Location: 167439-167738 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 167442-167553 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 167442-1675 5 3 bp Feature: gene Location: 168354-168836 bp Feature: domain Description: SmpB Location: 168384-168828 bp Feature: domain Description: SmpB Location: 168384-168828 bp Feature: gene Location: 168968-169381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668)