myRT

myRT report for GCA_900517505.1_18489_5_152

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Seq: ULEF01000032.1 Klebsiella pneumoniae strain EuSCAPE_ES248 genome assembly, contig: 18489_5152SCcontig000032, whole genome shotgun sequence (20644 bp)
Overview 1 RT 1: 2593-7523 bp Neighborhood of RT #1 [2593, 7549] PRK09776 PAS_9 PleD RVT-UG4 Prim_Zn_Ribbon Toprim_3 Feature: gene Location: 2593-3864 bp Feature: domain Description: PRK09776 Location: 2701-3007 bp Feature: domain Description: PRK09776 Location: 2701 -3007 bp Feature: domain Description: PAS_9 Location: 3025-3331 bp Feature: domain Description: PAS_9 Location: 3025-3331 bp Feature: domain Description: PleD Location: 3331-3835 bp Feature: domain Description: PleD Location: 3331 -3835 bp Feature: gene Location: 4219-4761 bp Feature: gene Location: 4816-5568 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5212-5467 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 521 2-5467 bp Feature: gene Location: 5685-6392 bp Feature: gene Location: 6482-7549 bp Feature: domain Description: Prim_Zn_Ribbon Location: 6593-6707 bp Feature: domain Description: Prim_Zn_Ribbon Location: 6593-6707 bp Feature: domain Description: Toprim_3 Location: 7229-7523 bp Feature: domain Description: Toprim_3 Location: 7229-7523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09776 (putative diguanylate cyclase; Provisional), PAS_9 (pfam13426), PleD (COG3706), RVT-UG4, Prim_Zn_Ribbon (smart00778), Toprim_3 (pfam13362)

Seq: ULEF01000061.1 Klebsiella pneumoniae strain EuSCAPE_ES248 genome assembly, contig: 18489_5152SCcontig000061, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 59-1891 bp Neighborhood of RT #1 [59, 1891] RVT-GII Feature: gene Location: 59-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: gene Location: 1700-1891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ULEF01000012.1 Klebsiella pneumoniae strain EuSCAPE_ES248 genome assembly, contig: 18489_5152SCcontig000012, whole genome shotgun sequence (152776 bp)
Overview 1 RT 1: 31990-38843 bp Neighborhood of RT #1 [31990, 38860] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31990-32655 bp Feature: domain Description: INT_P4_C Location: 32095-32653 bp Feature: domain Description: INT_P4_C Location: 3 2095-3 2653 bp Feature: gene Location: 32916-33356 bp Feature: domain Description: Integrase_1 Location: 32922-33138 bp Feature: domain Description: Integrase_1 Location: 3 2922-3 3 13 8 bp Feature: gene Location: 33413-35491 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33821-34265 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 3 821-3 4265 bp Feature: gene Location: 35491-38100 bp Feature: domain Description: FimD Location: 35548-38089 bp Feature: domain Description: FimD Location: 3 5548-3 8089 bp Feature: gene Location: 38132-38860 bp Feature: domain Description: FimC Location: 38180-38843 bp Feature: domain Description: FimC Location: 3 8180-3 8843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: ULEF01000060.1 Klebsiella pneumoniae strain EuSCAPE_ES248 genome assembly, contig: 18489_5152SCcontig000060, whole genome shotgun sequence (2273 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)