myRT

myRT report for GCA_900536355.1_TTBI19

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Seq: UNPL01000038.1 Escherichia coli strain ST_Warwick 12 / ST_Pasteur 36 genome assembly, contig: contig00038, whole genome shotgun sequence (50599 bp)
Overview 1 RT 1: 45405-48371 bp Neighborhood of RT #1 [45405, 48568] SLATT_5 RVT-UG17 DUF4094 Peptidase_S74 Feature: gene Location: 45405-45545 bp Feature: gene Location: 45559-46101 bp Feature: domain Description: SLATT_5 Location: 45565-46081 bp Feature: domain Description: SLATT_5 Location: 45565-46081 bp Feature: gene Location: 46088-47458 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 46316-46922 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4631 6-46922 bp Feature: gene Location: 47566-47853 bp Feature: gene Location: 47864-48568 bp Feature: domain Description: DUF4094 Location: 47906-47996 bp Feature: domain Description: DUF4094 Location: 47906-47996 bp Feature: domain Description: Peptidase_S74 Location: 48212-48371 bp Feature: domain Description: Peptidase_S74 Location: 4821 2-48371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, DUF4094 (pfam13334), Peptidase_S74 (pfam13884)

Seq: UNPL01000162.1 Escherichia coli strain ST_Warwick 12 / ST_Pasteur 36 genome assembly, contig: contig00162, whole genome shotgun sequence (2935 bp)
Overview 1 RT 1: 64-2771 bp Neighborhood of RT #1 [64, 2932] SEF14_adhesin YjiK RVT-GII GIIM Feature: gene Location: 64-549 bp Feature: domain Description: SEF14_adhesin Location: 88-325 bp Feature: domain Description: SEF14_adhesin Location: 88-32 5 bp Feature: gene Location: 986-1402 bp Feature: domain Description: YjiK Location: 1004-1397 bp Feature: domain Description: YjiK Location: 1004-1397 bp Feature: gene Location: 1580-2932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874-2 492 bp Feature: domain Description: GIIM Note: maturase Location: 2540-2771 bp Feature: domain Description: GIIM Note: maturase Location: 2 540-2 771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SEF14_adhesin (pfam06443), YjiK (COG3204), RVT-GII, GIIM (pfam08388)

Seq: UNPL01000167.1 Escherichia coli strain ST_Warwick 12 / ST_Pasteur 36 genome assembly, contig: contig00167, whole genome shotgun sequence (2543 bp)
Overview 1 RT 1: 1-2518 bp Neighborhood of RT #1 [1, 2518] PHA02517 RVT-GII GIIM Feature: gene Location: 1-213 bp Feature: domain Description: PHA02517 Location: 4-214 bp Feature: domain Description: PHA02517 Location: 4-214 bp Feature: gene Location: 330-1853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603-1335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603 -13 3 5 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1608 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1608 bp Feature: gene Location: 2147-2518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)