myRT

myRT report for GCA_900539375.1_UMGS128

Download annotations/find similar RTs

Seq: UQBY01000004.1 uncultured Clostridium sp. isolate UMGS128 genome assembly, contig: NODE_23_length_137823_cov_10.7074, whole genome shotgun sequence (137823 bp)
Overview 1 RT 1: 43063-49091 bp Neighborhood of RT #1 [43063, 49105] PRK07111 RVT-GII HNHc PRK07111 PRK07111 DegV Feature: gene Location: 43063-44106 bp Feature: domain Description: PRK07111 Location: 43066-44077 bp Feature: domain Description: PRK071 1 1 Location: 43066-44077 bp Feature: gene Location: 44147-44344 bp Feature: gene Location: 44460-46346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44781-45510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44781 -4551 0 bp Feature: domain Description: HNHc Note: nucleases Location: 46068-46188 bp Feature: domain Description: HNHc Note: nucleases Location: 46068-461 88 bp Feature: gene Location: 47117-47968 bp Feature: domain Description: PRK07111 Location: 47120-47843 bp Feature: domain Description: PRK071 1 1 Location: 471 20-47843 bp Feature: domain Description: PRK07111 Location: 47861-47957 bp Feature: domain Description: PRK071 1 1 Location: 47861 -47957 bp Feature: gene Location: 48263-49105 bp Feature: domain Description: DegV Location: 48275-49091 bp Feature: domain Description: DegV Location: 48275-49091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07111 (anaerobic ribonucleoside triphosphate reductase; Provisional), RVT-GII, HNHc (smart00507), DegV (TIGR00762)

Seq: UQBY01000028.1 uncultured Clostridium sp. isolate UMGS128 genome assembly, contig: NODE_544_length_29086_cov_7.32007, whole genome shotgun sequence (29086 bp)
Overview 1 RT 1: 11602-21960 bp Neighborhood of RT #1 [11602, 21992] YprA YprA RVT-UG2 NERD COG3972 GH38N_AMII_like_1 AAA-ATPase_like PDDEXK_9 Feature: gene Location: 11602-15576 bp Feature: domain Description: YprA Location: 11773-12439 bp Feature: domain Description: YprA Location: 11773-12 439 bp Feature: domain Description: YprA Location: 13906-14263 bp Feature: domain Description: YprA Location: 13906-142 63 bp Feature: gene Location: 15581-16447 bp Feature: gene Location: 16523-17767 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 16661-17465 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 16661-17465 bp Feature: gene Location: 18071-20116 bp Feature: domain Description: NERD Location: 18119-18464 bp Feature: domain Description: NERD Location: 18119-18464 bp Feature: domain Description: COG3972 Location: 18743-19307 bp Feature: domain Description: COG3972 Location: 18743-19307 bp Feature: domain Description: GH38N_AMII_like_1 Location: 19541-19991 bp Feature: domain Description: GH38N_AMII_like_1 Location: 19541-19991 bp Feature: gene Location: 20430-21992 bp Feature: domain Description: AAA-ATPase_like Location: 20457-21252 bp Feature: domain Description: AAA-ATPase_like Location: 2 0457-2 12 52 bp Feature: domain Description: PDDEXK_9 Location: 21708-21960 bp Feature: domain Description: PDDEXK_9 Location: 2 1708-2 1960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YprA (COG1205), RVT-UG2, NERD (pfam08378), COG3972 (Superfamily I DNA and RNA helicases ), GH38N_AMII_like_1 (cd10791), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)