myRT

myRT report for GCA_900539515.1_UMGS147

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Seq: UQCO01000011.1 uncultured Roseburia sp. isolate UMGS147 genome assembly, contig: NODE_111_length_93243_cov_21.901520, whole genome shotgun sequence (93243 bp)
Overview 1 RT 1: 22553-27151 bp Neighborhood of RT #1 [22553, 27153] ACD_LpsHSP_like RVT-GII GIIM OmpR BaeS Feature: gene Location: 22553-22999 bp Feature: domain Description: ACD_LpsHSP_like Location: 22670-22949 bp Feature: domain Description: ACD_LpsHSP_like Location: 22670-22949 bp Feature: gene Location: 23408-23545 bp Feature: gene Location: 23532-24815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23742-24357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23742-24357 bp Feature: domain Description: GIIM Note: maturase Location: 24417-24633 bp Feature: domain Description: GIIM Note: maturase Location: 2441 7-24633 bp Feature: gene Location: 25075-25749 bp Feature: domain Description: OmpR Location: 25078-25741 bp Feature: domain Description: OmpR Location: 25078-25741 bp Feature: gene Location: 25753-27153 bp Feature: domain Description: BaeS Location: 26266-27151 bp Feature: domain Description: BaeS Location: 26266-271 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACD_LpsHSP_like (cd06471), RVT-GII, GIIM (pfam08388), OmpR (COG0745), BaeS (COG0642)

Seq: UQCO01000038.1 uncultured Roseburia sp. isolate UMGS147 genome assembly, contig: NODE_536_length_34000_cov_20.427498, whole genome shotgun sequence (34000 bp)
Overview 1 RT 1: 2-4522 bp Neighborhood of RT #1 [2, 4522] DUF3837 RVT-CRISPR cas1_HMARI Cas2_I_II_III Feature: gene Location: 2-148 bp Feature: gene Location: 206-541 bp Feature: domain Description: DUF3837 Location: 209-506 bp Feature: domain Description: DUF3837 Location: 2 09-506 bp Feature: gene Location: 1614-3521 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1824-2406 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 182 4-2 406 bp Feature: domain Description: cas1_HMARI Location: 2541-3513 bp Feature: domain Description: cas1_HMARI Location: 2 541-3513 bp Feature: gene Location: 3808-4140 bp Feature: domain Description: Cas2_I_II_III Location: 3889-4111 bp Feature: domain Description: Cas2 _I_II_III Location: 3889-4111 bp Feature: gene Location: 4160-4522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3837 (pfam12939), RVT-CRISPR, cas1_HMARI (TIGR03641), Cas2_I_II_III (cl11442)