myRT

myRT report for GCA_900539995.1_UMGS199

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Seq: UQEP01000016.1 uncultured Ruminococcus sp. isolate UMGS199 genome assembly, contig: NODE_33_length_69374_cov_20.8125, whole genome shotgun sequence (69374 bp)
Overview 1 RT 1: 22026-26848 bp Neighborhood of RT #1 [22026, 26862] XRE HipB COG2932 RVT_N RVT-GII GIIM PRK03103 LexA_DNA_bind Feature: gene Location: 22026-22226 bp Feature: domain Description: XRE Location: 22038-22221 bp Feature: domain Description: XRE Location: 22038-22221 bp Feature: gene Location: 22283-23014 bp Feature: domain Description: HipB Location: 22295-22511 bp Feature: domain Description: HipB Location: 22295-2251 1 bp Feature: domain Description: COG2932 Location: 22667-22979 bp Feature: domain Description: COG2932 Location: 22667-22979 bp Feature: gene Location: 23835-25310 bp Feature: RT Description: RVT_N Location: 23886-24123 bp Feature: RT Description: RVT_N Location: 23886-241 23 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24174-24822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 74-24822 bp Feature: domain Description: GIIM Note: maturase Location: 24873-25107 bp Feature: domain Description: GIIM Note: maturase Location: 24873-251 07 bp Feature: gene Location: 25307-26635 bp Feature: domain Description: PRK03103 Location: 25433-26567 bp Feature: domain Description: PRK031 03 Location: 25433-26567 bp Feature: gene Location: 26650-26862 bp Feature: domain Description: LexA_DNA_bind Location: 26659-26848 bp Feature: domain Description: LexA_DNA_bind Location: 26659-26848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK03103 (DNA polymerase IV; Reviewed), LexA_DNA_bind (pfam01726)

Seq: UQEP01000027.1 uncultured Ruminococcus sp. isolate UMGS199 genome assembly, contig: NODE_80_length_45940_cov_20.2088, whole genome shotgun sequence (45940 bp)
Overview 1 RT 1: 12827-17517 bp Neighborhood of RT #1 [12827, 17552] bac_cardiolipin RVT-GII GIIM DUF1934 Feature: gene Location: 12827-14302 bp Feature: domain Description: bac_cardiolipin Location: 12887-14300 bp Feature: domain Description: bac_cardiolipin Location: 12 887-14300 bp Feature: gene Location: 14640-15086 bp Feature: gene Location: 15157-16548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15472-16096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15472 -16096 bp Feature: domain Description: GIIM Note: maturase Location: 16153-16369 bp Feature: domain Description: GIIM Note: maturase Location: 16153-16369 bp Feature: gene Location: 16623-16862 bp Feature: gene Location: 17094-17552 bp Feature: domain Description: DUF1934 Location: 17157-17517 bp Feature: domain Description: DUF1934 Location: 17157-17517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bac_cardiolipin (TIGR04265), RVT-GII, GIIM (pfam08388), DUF1934 (pfam09148)

Seq: UQEP01000077.1 uncultured Ruminococcus sp. isolate UMGS199 genome assembly, contig: NODE_593_length_6706_cov_21.0089, whole genome shotgun sequence (6706 bp)
Overview 1 RT 1: 3397-6473 bp Neighborhood of RT #1 [3397, 6544] TnpV Tar MA RVT-GII GIIM Feature: gene Location: 3397-3762 bp Feature: domain Description: TnpV Location: 3427-3754 bp Feature: domain Description: TnpV Location: 3 427-3 754 bp Feature: gene Location: 4427-5446 bp Feature: domain Description: Tar Location: 4436-4616 bp Feature: domain Description: Tar Location: 443 6-4616 bp Feature: domain Description: MA Location: 4697-5432 bp Feature: domain Description: MA Location: 4697-543 2 bp Feature: gene Location: 5618-6544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5624-6194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5624-6194 bp Feature: domain Description: GIIM Note: maturase Location: 6254-6473 bp Feature: domain Description: GIIM Note: maturase Location: 6254-6473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), Tar (COG0840), MA (smart00283), RVT-GII, GIIM (pfam08388)