myRT

myRT report for GCA_900540325.1_UMGS230

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Seq: UQFI01000001.1 uncultured Ruminococcaceae bacterium isolate UMGS230 genome assembly, contig: NODE_2_length_256835_cov_31.533663, whole genome shotgun sequence (256835 bp)
Overview 1 RT 1: 21636-36650 bp Neighborhood of RT #1 [21636, 36898] LRR_5 LRR_5 LRR_5 LRR_5 Flg_new LPD11 PRK05399 RVT-GII HNHc COG4646 HELICc HTH_XRE CtkA Feature: gene Location: 21636-24134 bp Feature: domain Description: LRR_5 Location: 22362-22641 bp Feature: domain Description: LRR_5 Location: 22362-22641 bp Feature: domain Description: LRR_5 Location: 22800-23034 bp Feature: domain Description: LRR_5 Location: 22800-23034 bp Feature: domain Description: LRR_5 Location: 23112-23223 bp Feature: domain Description: LRR_5 Location: 231 1 2-23223 bp Feature: domain Description: LRR_5 Location: 23541-23628 bp Feature: domain Description: LRR_5 Location: 23541 -23628 bp Feature: domain Description: Flg_new Location: 23805-23982 bp Feature: domain Description: Flg_new Location: 23805-23982 bp Feature: gene Location: 24214-28557 bp Feature: domain Description: LPD11 Location: 26119-26314 bp Feature: domain Description: LPD1 1 Location: 261 1 9-2631 4 bp Feature: domain Description: PRK05399 Location: 26974-27208 bp Feature: domain Description: PRK05399 Location: 26974-27208 bp Feature: gene Location: 29236-31107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29557-30292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29557-30292 bp Feature: domain Description: HNHc Note: nucleases Location: 30847-30988 bp Feature: domain Description: HNHc Note: nucleases Location: 30847-30988 bp Feature: gene Location: 31299-35420 bp Feature: domain Description: COG4646 Location: 31533-34107 bp Feature: domain Description: COG4646 Location: 31 533-341 07 bp Feature: domain Description: HELICc Location: 34143-34521 bp Feature: domain Description: HELICc Location: 341 43-34521 bp Feature: gene Location: 35486-36898 bp Feature: domain Description: HTH_XRE Location: 35531-35693 bp Feature: domain Description: HTH_XRE Location: 35531 -35693 bp Feature: domain Description: CtkA Location: 36161-36650 bp Feature: domain Description: CtkA Location: 361 61 -36650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_5 (pfam13306), Flg_new (pfam09479), LPD11 (pfam18824), PRK05399 (DNA mismatch repair protein MutS; Provisional), RVT-GII, HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), HTH_XRE (smart00530), CtkA (cd17792)

Seq: UQFI01000030.1 uncultured Ruminococcaceae bacterium isolate UMGS230 genome assembly, contig: NODE_719_length_22753_cov_23.858314, whole genome shotgun sequence (22753 bp)
Overview 1 RT 1: 837-5745 bp Neighborhood of RT #1 [837, 6362] Resolvase Recombinase Zn_ribbon_recom RVT-Retrons Relaxase Feature: gene Location: 837-2474 bp Feature: domain Description: Resolvase Location: 939-1383 bp Feature: domain Description: Resolvase Location: 939-1383 bp Feature: domain Description: Recombinase Location: 1452-1776 bp Feature: domain Description: Recombinase Location: 1452 -1776 bp Feature: domain Description: Zn_ribbon_recom Location: 1848-2025 bp Feature: domain Description: Zn_ribbon_recom Location: 1848-2 02 5 bp Feature: gene Location: 2883-3827 bp Feature: gene Location: 3824-4741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3926-4505 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 392 6-4505 bp Feature: gene Location: 4788-4958 bp Feature: gene Location: 5001-6362 bp Feature: domain Description: Relaxase Location: 5049-5745 bp Feature: domain Description: Relaxase Location: 5049-5745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Relaxase (pfam03432), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)