myRT

myRT report for GCA_900540835.1_UMGS290

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Seq: UQHN01000002.1 uncultured Collinsella sp. isolate UMGS290 genome assembly, contig: NODE_77_length_129380_cov_15.004871, whole genome shotgun sequence (129380 bp)
Overview 1 RT 1: 100142-103841 bp Neighborhood of RT #1 [100142, 103855] RVT-DGRs Phage_XkdX Feature: gene Location: 100142-101050 bp Feature: gene Location: 101149-101625 bp Feature: gene Location: 101990-103228 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102266-102866 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 02266-1 02866 bp Feature: gene Location: 103347-103673 bp Feature: gene Location: 103673-103855 bp Feature: domain Description: Phage_XkdX Location: 103724-103841 bp Feature: domain Description: Phage_XkdX Location: 1 03724-1 03841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: UQHN01000015.1 uncultured Collinsella sp. isolate UMGS290 genome assembly, contig: NODE_449_length_55325_cov_14.666998, whole genome shotgun sequence (55325 bp)
Overview 1 RT 1: 2605-7285 bp Neighborhood of RT #1 [2605, 7509] HTH_XRE RVT-Retrons AAA_13 AAA_13 Abi_2 Feature: gene Location: 2605-2880 bp Feature: gene Location: 2946-3233 bp Feature: domain Description: HTH_XRE Location: 2955-3123 bp Feature: domain Description: HTH_XRE Location: 2 955-312 3 bp Feature: gene Location: 3265-4149 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3364-3922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3364-392 2 bp Feature: gene Location: 4216-6363 bp Feature: domain Description: AAA_13 Location: 4300-4501 bp Feature: domain Description: AAA_13 Location: 4300-4501 bp Feature: domain Description: AAA_13 Location: 5212-5692 bp Feature: domain Description: AAA_13 Location: 52 12 -5692 bp Feature: gene Location: 6577-7509 bp Feature: domain Description: Abi_2 Location: 6664-7285 bp Feature: domain Description: Abi_2 Location: 6664-72 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, AAA_13 (pfam13166), Abi_2 (pfam07751)