myRT

myRT report for GCA_900545125.1_UMGS739

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Seq: UQXS01000024.1 uncultured Ruminococcus sp. isolate UMGS739 genome assembly, contig: NODE_1377_length_17461_cov_4.094910, whole genome shotgun sequence (17461 bp)
Overview 1 RT 1: 12718-16730 bp Neighborhood of RT #1 [12718, 16750] maj_tail_phi13 RVT-GII HNHc HK97-gp10_like Feature: gene Location: 12718-13329 bp Feature: domain Description: maj_tail_phi13 Location: 12739-13282 bp Feature: domain Description: maj_tail_phi1 3 Location: 1 2739-1 3282 bp Feature: gene Location: 13332-13820 bp Feature: gene Location: 13892-15748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14192-14930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 92-1 4930 bp Feature: domain Description: HNHc Note: nucleases Location: 15497-15626 bp Feature: domain Description: HNHc Note: nucleases Location: 1 5497-1 5626 bp Feature: gene Location: 16071-16418 bp Feature: gene Location: 16460-16750 bp Feature: domain Description: HK97-gp10_like Location: 16514-16730 bp Feature: domain Description: HK97-gp1 0_like Location: 1 651 4-1 6730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT maj_tail_phi13 (TIGR01603), RVT-GII, HNHc (smart00507), HK97-gp10_like (pfam04883)

Seq: UQXS01000038.1 uncultured Ruminococcus sp. isolate UMGS739 genome assembly, contig: NODE_1837_length_14240_cov_4.879027, whole genome shotgun sequence (14240 bp)
Overview 1 RT 1: 135-4399 bp Neighborhood of RT #1 [135, 4560] PhdYeFM_antitox YqbO RVT-GII Intron_maturas2 HNHc Peptidase_M15_3 GH25_LytC-like PRK11924 Feature: gene Location: 135-377 bp Feature: domain Description: PhdYeFM_antitox Location: 156-297 bp Feature: domain Description: PhdYeFM_antitox Location: 156-2 97 bp Feature: gene Location: 460-834 bp Feature: domain Description: YqbO Location: 463-703 bp Feature: domain Description: YqbO Location: 463-703 bp Feature: gene Location: 1004-2806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1277-2084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 77-2 084 bp Feature: domain Description: Intron_maturas2 Location: 2168-2456 bp Feature: domain Description: Intron_maturas2 Location: 2 168-2 456 bp Feature: domain Description: HNHc Note: nucleases Location: 2630-2774 bp Feature: domain Description: HNHc Note: nucleases Location: 2 630-2 774 bp Feature: gene Location: 3040-4230 bp Feature: domain Description: Peptidase_M15_3 Location: 3085-3415 bp Feature: domain Description: Peptidase_M15_3 Location: 3085-3415 bp Feature: domain Description: GH25_LytC-like Location: 3523-4084 bp Feature: domain Description: GH2 5_LytC-like Location: 352 3-4084 bp Feature: gene Location: 4285-4560 bp Feature: domain Description: PRK11924 Location: 4294-4399 bp Feature: domain Description: PRK1192 4 Location: 42 94-4399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PhdYeFM_antitox (pfam02604), PRK11924 (RNA polymerase sigma factor; Provisional), YqbO (COG5280)

Seq: UQXS01000128.1 uncultured Ruminococcus sp. isolate UMGS739 genome assembly, contig: NODE_4449_length_6995_cov_3.905908, whole genome shotgun sequence (6995 bp)
Overview 1 RT 1: 407-6742 bp Neighborhood of RT #1 [407, 6742] Amidoligase_2 GlmS RVT-Retrons Phage_int_SAM_3 INT_ICEBs1_C_like Feature: gene Location: 407-1513 bp Feature: domain Description: Amidoligase_2 Location: 917-1361 bp Feature: domain Description: Amidoligase_2 Location: 917-13 61 bp Feature: gene Location: 1671-2654 bp Feature: domain Description: GlmS Location: 1674-2361 bp Feature: domain Description: GlmS Location: 1674-23 61 bp Feature: gene Location: 2882-3835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3035-3584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 03 5-3 584 bp Feature: gene Location: 3879-5057 bp Feature: domain Description: Phage_int_SAM_3 Location: 4083-4254 bp Feature: domain Description: Phage_int_SAM_3 Location: 4083 -4254 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4437-5001 bp Feature: domain Description: INT_ICEBs1_C_like Location: 443 7-5001 bp Feature: gene Location: 5228-6742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlmS (COG0449), RVT-Retrons, Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), Amidoligase_2 (pfam12224)

Seq: UQXS01000222.1 uncultured Ruminococcus sp. isolate UMGS739 genome assembly, contig: NODE_9452_length_3608_cov_4.096820, whole genome shotgun sequence (3608 bp)
Overview 1 RT 1: 1365-3392 bp Neighborhood of RT #1 [1365, 3454] RVT-GII Feature: gene Location: 1365-1655 bp Feature: gene Location: 2127-2930 bp Feature: gene Location: 2948-3454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2957-3392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2957-3392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII