myRT

myRT report for GCA_900547205.1_UMGS963

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Seq: URFY01000005.1 uncultured Bacteroides sp. isolate UMGS963 genome assembly, contig: NODE_5_length_159016_cov_26.4488, whole genome shotgun sequence (159016 bp)
Overview 1 RT 1: 131970-144626 bp Neighborhood of RT #1 [131970, 144626] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 131970-133775 bp Feature: domain Description: rpsA Location: 132036-133650 bp Feature: domain Description: rpsA Location: 1 32036-1 33650 bp Feature: gene Location: 133913-139897 bp Feature: domain Description: DUF4011 Location: 135104-135617 bp Feature: domain Description: DUF401 1 Location: 1 351 04-1 3561 7 bp Feature: domain Description: DEXXQc_SF1 Location: 135965-136607 bp Feature: domain Description: DEXXQc_SF1 Location: 1 35965-1 36607 bp Feature: domain Description: DEXXQc_SF1 Location: 137396-138152 bp Feature: domain Description: DEXXQc_SF1 Location: 1 37396-1 381 52 bp Feature: domain Description: TIGR00376 Location: 138281-138671 bp Feature: domain Description: TIGR00376 Location: 1 38281 -1 38671 bp Feature: domain Description: MTES_1575 Location: 138824-139106 bp Feature: domain Description: MTES_1 575 Location: 1 38824-1 391 06 bp Feature: domain Description: DUF3320 Location: 139406-139535 bp Feature: domain Description: DUF3320 Location: 1 39406-1 39535 bp Feature: gene Location: 139898-141016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 140210-140762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4021 0-1 40762 bp Feature: gene Location: 141221-143410 bp Feature: gene Location: 143823-144626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: URFY01000031.1 uncultured Bacteroides sp. isolate UMGS963 genome assembly, contig: NODE_32_length_56064_cov_26.0327, whole genome shotgun sequence (56064 bp)
Overview 1 RT 1: 12802-19293 bp Neighborhood of RT #1 [12802, 19293] AcrR RVT-GII GIIM LacZ Glyco_hydro2_C5 F5_F8_type_C Feature: gene Location: 12802-12930 bp Feature: gene Location: 12975-13964 bp Feature: domain Description: AcrR Location: 13377-13863 bp Feature: domain Description: AcrR Location: 13377-13863 bp Feature: gene Location: 14280-15548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14493-15150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14493-15150 bp Feature: domain Description: GIIM Note: maturase Location: 15231-15438 bp Feature: domain Description: GIIM Note: maturase Location: 152 31-15438 bp Feature: gene Location: 16129-18735 bp Feature: domain Description: LacZ Location: 16387-17761 bp Feature: domain Description: LacZ Location: 16387-17761 bp Feature: domain Description: Glyco_hydro2_C5 Location: 17941-18229 bp Feature: domain Description: Glyco_hydro2 _C5 Location: 17941-182 2 9 bp Feature: domain Description: F5_F8_type_C Location: 18367-18676 bp Feature: domain Description: F5_F8_type_C Location: 18367-18676 bp Feature: gene Location: 18970-19293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), RVT-GII, GIIM (pfam08388), LacZ (COG3250), Glyco_hydro2_C5 (pfam18565), F5_F8_type_C (pfam00754)

Seq: URFY01000111.1 uncultured Bacteroides sp. isolate UMGS963 genome assembly, contig: NODE_131_length_4576_cov_33.8447, whole genome shotgun sequence (4576 bp)
Overview 1 RT 1: 53-1849 bp Neighborhood of RT #1 [53, 2124] Fib_succ_major RVT-DGRs RT_G2_intron Avd_like MutS_I Feature: gene Location: 53-1126 bp Feature: domain Description: Fib_succ_major Location: 146-359 bp Feature: domain Description: Fib_succ_major Location: 146-3 59 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 509-662 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 509-662 bp Feature: domain Description: RT_G2_intron Location: 671-860 bp Feature: domain Description: RT_G2_intron Location: 671-860 bp Feature: gene Location: 1261-1623 bp Feature: domain Description: Avd_like Location: 1288-1591 bp Feature: domain Description: Avd_like Location: 1288-1591 bp Feature: gene Location: 1627-2124 bp Feature: domain Description: MutS_I Location: 1663-1849 bp Feature: domain Description: MutS_I Location: 1663 -1849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), MutS_I (pfam01624), Fib_succ_major (TIGR02145), RVT-DGRs, RT_G2_intron (cd01651)