myRT

myRT report for GCA_900547265.1_UMGS967

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Seq: URGD01000038.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_136_length_21281_cov_12.177471, whole genome shotgun sequence (21281 bp)
Overview 1 RT 1: 12101-19794 bp Neighborhood of RT #1 [12101, 19823] RVT-GII GIIM PRK10060 PAS_3 PRK11359 sensory_box PAS_3 PRK10060 Feature: gene Location: 12101-12715 bp Feature: gene Location: 12767-13132 bp Feature: gene Location: 13694-14977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13898-14513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3898-1 451 3 bp Feature: domain Description: GIIM Note: maturase Location: 14573-14804 bp Feature: domain Description: GIIM Note: maturase Location: 1 4573-1 4804 bp Feature: gene Location: 14971-15117 bp Feature: gene Location: 15198-19823 bp Feature: domain Description: PRK10060 Location: 15846-17205 bp Feature: domain Description: PRK1 0060 Location: 1 5846-1 7205 bp Feature: domain Description: PAS_3 Location: 17358-17610 bp Feature: domain Description: PAS_3 Location: 1 7358-1 761 0 bp Feature: domain Description: PRK11359 Location: 17820-18318 bp Feature: domain Description: PRK1 1 359 Location: 1 7820-1 831 8 bp Feature: domain Description: sensory_box Location: 18633-18879 bp Feature: domain Description: sensory_box Location: 1 8633-1 8879 bp Feature: domain Description: PAS_3 Location: 19062-19242 bp Feature: domain Description: PAS_3 Location: 1 9062-1 9242 bp Feature: domain Description: PRK10060 Location: 19248-19794 bp Feature: domain Description: PRK1 0060 Location: 1 9248-1 9794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10060 (cyclic di-GMP phosphodiesterase), PAS_3 (pfam08447), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), sensory_box (TIGR00229)

Seq: URGD01000085.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_293_length_16354_cov_8.692987, whole genome shotgun sequence (16354 bp)
Overview 1 RT 1: 14406-16267 bp Neighborhood of RT #1 [14406, 16267] Phage_XkdX Chibby RVT-DGRs Feature: gene Location: 14406-14555 bp Feature: domain Description: Phage_XkdX Location: 14412-14547 bp Feature: domain Description: Phage_XkdX Location: 14412 -14547 bp Feature: gene Location: 14559-14888 bp Feature: domain Description: Chibby Location: 14622-14868 bp Feature: domain Description: Chibby Location: 1462 2 -14868 bp Feature: gene Location: 14837-15970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15044-15746 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15044-15746 bp Feature: gene Location: 16124-16267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), Chibby (pfam14645), RVT-DGRs

Seq: URGD01000146.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_554_length_12047_cov_11.047698, whole genome shotgun sequence (12047 bp)
Overview 1 RT 1: 2-2033 bp Neighborhood of RT #1 [2, 2038] RVT-Retrons PRK09273 Feature: gene Location: 2-478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14-182 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14-182 bp Feature: gene Location: 544-1329 bp Feature: gene Location: 1400-2038 bp Feature: domain Description: PRK09273 Location: 1403-2033 bp Feature: domain Description: PRK09273 Location: 1403 -203 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09273 (hypothetical protein; Provisional)

Seq: URGD01000170.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_679_length_10796_cov_11.013034, whole genome shotgun sequence (10796 bp)
Overview 1 RT 1: 7510-10794 bp Neighborhood of RT #1 [7510, 10793] RVT-GII Intron_maturas2 Feature: gene Location: 7510-7806 bp Feature: gene Location: 8252-8563 bp Feature: gene Location: 9366-10793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9687-10521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9687-10521 bp Feature: domain Description: Intron_maturas2 Location: 10596-10794 bp Feature: domain Description: Intron_maturas2 Location: 10596-10794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: URGD01000171.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_683_length_10750_cov_21.754091, whole genome shotgun sequence (10750 bp)
Overview 1 RT 1: 2-3220 bp Neighborhood of RT #1 [2, 3252] RVT-GII GIIM typeII_sec_gspG tig Feature: gene Location: 2-1342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-893 bp Feature: domain Description: GIIM Note: maturase Location: 947-1163 bp Feature: domain Description: GIIM Note: maturase Location: 947-1163 bp Feature: gene Location: 1414-1905 bp Feature: domain Description: typeII_sec_gspG Location: 1432-1618 bp Feature: domain Description: typeII_sec_gspG Location: 1432-1618 bp Feature: gene Location: 2071-3252 bp Feature: domain Description: tig Location: 2266-3220 bp Feature: domain Description: tig Location: 2266-3220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), typeII_sec_gspG (TIGR01710), tig (TIGR00115)

Seq: URGD01000180.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_707_length_10616_cov_11.865922, whole genome shotgun sequence (10616 bp)
Overview 1 RT 1: 8087-10614 bp Neighborhood of RT #1 [8087, 10613] YesN YesN RVT-Retrons Feature: gene Location: 8087-9610 bp Feature: domain Description: YesN Location: 8090-8453 bp Feature: domain Description: YesN Location: 8090-8453 bp Feature: domain Description: YesN Location: 9083-9602 bp Feature: domain Description: YesN Location: 9083-96 02 bp Feature: gene Location: 9823-10005 bp Feature: gene Location: 10023-10613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10188-10614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10188-106 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), RVT-Retrons

Seq: URGD01000382.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_1866_length_5545_cov_15.742259, whole genome shotgun sequence (5545 bp)
Overview 1 RT 1: 1001-5514 bp Neighborhood of RT #1 [1001, 5543] T4SS-DNA_transf RVT-GII Intron_maturas2 VirD4 Feature: gene Location: 1001-1363 bp Feature: gene Location: 1378-1731 bp Feature: domain Description: T4SS-DNA_transf Location: 1384-1561 bp Feature: domain Description: T4SS-DNA_transf Location: 1384-1561 bp Feature: gene Location: 1899-3728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-3009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217 5-3009 bp Feature: domain Description: Intron_maturas2 Location: 3093-3438 bp Feature: domain Description: Intron_maturas2 Location: 3093-3438 bp Feature: gene Location: 3876-4049 bp Feature: gene Location: 4278-5543 bp Feature: domain Description: VirD4 Location: 4401-5514 bp Feature: domain Description: VirD4 Location: 4401-5514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505)

Seq: URGD01000408.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_2141_length_4981_cov_10.941129, whole genome shotgun sequence (4981 bp)
Overview 1 RT 1: 864-4798 bp Neighborhood of RT #1 [864, 4872] STE14 GIY-YIG_COG3410 DUF2075 RVT-GII LbH_XAT Feature: gene Location: 864-1382 bp Feature: domain Description: STE14 Location: 1047-1380 bp Feature: domain Description: STE14 Location: 1047-138 0 bp Feature: gene Location: 1458-3203 bp Feature: domain Description: GIY-YIG_COG3410 Location: 1566-1818 bp Feature: domain Description: GIY-YIG_COG3410 Location: 1566-18 18 bp Feature: domain Description: DUF2075 Location: 2070-3165 bp Feature: domain Description: DUF2075 Location: 2070-3165 bp Feature: gene Location: 3283-4005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3382-3961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338 2-3961 bp Feature: gene Location: 4231-4872 bp Feature: domain Description: LbH_XAT Location: 4318-4798 bp Feature: domain Description: LbH_XAT Location: 4318 -4798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STE14 (COG2020), GIY-YIG_COG3410 (cd10439), DUF2075 (pfam09848), RVT-GII, LbH_XAT (cd03349)

Seq: URGD01000478.1 uncultured Blautia sp. isolate UMGS967 genome assembly, contig: NODE_2765_length_4044_cov_12.495613, whole genome shotgun sequence (4044 bp)
Overview 1 RT 1: 2-4027 bp Neighborhood of RT #1 [2, 4027] RVT-GII GIIM RVT-GII VirD4 Feature: gene Location: 2-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-416 bp Feature: domain Description: GIIM Note: maturase Location: 497-713 bp Feature: domain Description: GIIM Note: maturase Location: 49 7-713 bp Feature: gene Location: 885-1850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888-1029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888-1029 bp Feature: gene Location: 2029-3564 bp Feature: domain Description: VirD4 Location: 2041-3061 bp Feature: domain Description: VirD4 Location: 2041-3061 bp Feature: gene Location: 3698-4027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), VirD4 (COG3505)